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Found 26 result(s)

Bitbucket

Atlassian Bitbucket

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Bitbucket is a web-based version control repository hosting service owned by Atlassian, for source code and development projects that use either Mercurial or Git revision control systems.

LiceBase

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LiceBase is a database for sea lice genomics. LiceBase provides the genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, Blast functionality and access to related high-thoughput genomics data.

DANS Data Station Social Sciences and Humanities

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A domain-specific repository for Social Sciences and Humanities data, primarily aimed at the Netherlands, but not exclusively.

West African Vegetation

A vegetation data network for West Africa

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This is a database for vegetation data from West Africa, i.e. phytosociological and dendrometric relevés as well as floristic inventories. The West African Vegetation Database has been developed in the framework of the projects “SUN - Sustainable Use of Natural Vegetation in West Africa” and “Biodiversity Transect Analysis in Africa” (BIOTA, https://www.biota-africa.org/).

Citrination

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Citrination is the premier open database and analytics platform for the world's material and chemical information. Here you can find tabulated materials property data, that users have contributed or Citrine has automatically extracted from literature.

data.world

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A data repository and social network so that researchers can interact and collaborate, also offers tutorials and datasets for data science learning. "data.world is designed for data and the people who work with data. From professional projects to open data, data.world helps you host and share your data, collaborate with your team, and capture context and conclusions as you work."

neuGRID

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NeuGRID is a secure data archiving and HPC processing system. The neuGRID platform uses a robust infrastructure to provide researchers with a simple interface for analysing, searching, retrieving and disseminating their biomedical data. With hundreds of investigators across the globe and more than 10 million of downloadable attributes, neuGRID aims to become a widespread resource for brain analyses. NeuGRID platform guarantees reliability with a fault-tolerant network to prevent system failure.

LDbase

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A research data repository for the education and developmental sciences.

PSLC DataShop

Pittsburgh Science of Learning Center DataShop

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PSLC DataShop houses datasets in the areas of learning science and educational software. The site also provides online tools for analyzing and reporting the data.

ScienceBase USGS

ScienceBase catalog

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ScienceBase provides access to aggregated information derived from many data and information domains, including feeds from existing data systems, metadata catalogs, and scientists contributing new and original content. ScienceBase architecture is designed to help science teams and data practitioners centralize their data and information resources to create a foundation needed for their work. ScienceBase, both original software and engineered components, is released as an open source project to promote involvement from the larger scientific programming community both inside and outside the USGS.

GeneWeaver.org

The Ontological Discovery Environment

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GeneWeaver combines cross-species data and gene entity integration, scalable hierarchical analysis of user data with a community-built and curated data archive of gene sets and gene networks, and tools for data driven comparison of user-defined biological, behavioral and disease concepts. Gene Weaver allows users to integrate gene sets across species, tissue and experimental platform. It differs from conventional gene set over-representation analysis tools in that it allows users to evaluate intersections among all combinations of a collection of gene sets, including, but not limited to annotations to controlled vocabularies. There are numerous applications of this approach. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users.

National Genomic Resources Repository

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National Genomic Resources Repository is established as an institutional framework for methodical and centralized efforts to collect, generate, conserve and distribute genomic resources for agricultural research.

International Long Term Ecological Research

ILTER

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ILTER is a 'network of networks', a global network of research sites located in a wide array of ecosystems that can help understand environmental change across the globe. ILTER's focus is on long-term, site-based research and monitoring.

CLARIN-IS

CLARIN á Íslandi

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Iceland joined CLARIN ERIC on February 1st, 2020, after having been an observer since November 2018. The Ministry of Education, Science and Culture assigned The Árni Magnússon Institute for Icelandic Studies the role of leading partner in the Icelandic National Consortium and appointed Professor Emeritus Eiríkur Rögnvaldsson as National Coordinator, later replaced by Starkaður Barkarson, a project manager at The Árni Magnússon Institute. Most of the relevant institutions participate in the CLARIN-IS National Consortium. The Árni Magnússon Institute has already established a Metadata Providing Centre (CLARIN C-Centre) which hosts metadata for Icelandic language resources and makes them available through the Virtual Language Observatory. The aim is to establish a Service Providing Centre (CLARIN B-Centre) which will provide both service and access to resources and knowledge.

KBase

KBase: The U.S. Department of Energy Systems Biology Knowledgebase

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The Department of Energy Systems Biology Knowledgebase (KBase) is a software and data platform designed to meet the grand challenge of systems biology: predicting and designing biological function. KBase integrates data and tools in a unified graphical interface so users do not need to access them from numerous sources or learn multiple systems in order to create and run sophisticated systems biology workflows. Users can perform large-scale analyses and combine multiple lines of evidence to model plant and microbial physiology and community dynamics. KBase is the first large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide a knowledgebase: an integrated environment where knowledge and insights are created and multiplied.

FAIRDOMHub

The SEEK datafiles

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The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. FAIRDOM (Web Site) will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.

Ecosounds

Queensland University of Technology

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Ecosounds is a repository of environmental audio recordings. This website facilitates the management, access, visualization, and analysis of environmental acoustic data. It uses the Acoustic Workbench software which is open source and available from GitHub. The website is run by the QUT Ecoacoustics Research Group to support bioacoustics and ecoacoustics research.

ROHub

Research Object Hub Platform

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ROHub is a holistic solution for the storage, lifecycle management and preservation of scientific investigations, campaigns and operational processes via research objects. It makes these resources available to others, allows to publish and release them through a DOI, and allows to discover and reuse pre-existing scientific knowledge. Built entirely around the research object concept and inspired by sustainable software management principles, ROHub is the reference platform implementing natively the full research object model and paradigm, which provides the backbone to a wealth of RO-centric applications and interfaces across different scientific communities.

Databrary

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Databrary is a data library for researchers to share research data and analytical tools with other investigators. It is a web-based repository for open sharing and preservation of video data and associated metadata in the area of behavioral sciences. The project aims to increase the openness in scientific research and dedicated to transforming the culture of science through building a community of researchers empowering them with an unprecedented set of tools for discovery. Databrary is complemented by Datavyu (an open source video-coding software).

DANS Data Station Life Sciences

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A domain-specific repository for the Life Sciences, covering the health, medical as well as the green life sciences. The repository services are primarily aimed at the Netherlands, but not exclusively.

Marine Data Archive

MDA

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The Marine Data Archive (MDA) is an online repository specifically developed to independently archive data files in a fully documented manner. The MDA can serve individuals, consortia, working groups and institutes to manage data files and file versions for a specific context (project, report, analysis, monitoring campaign), as a personal or institutional archive or back-up system and as an open repository for data publication.

Network Data Exchange

NDEx

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The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. The NDEx Project maintains a free, public website; alternatively, users can also decide to run their own copies of the NDEx Server software in cases where the stored networks must be kept in a highly secure environment (such as for HIPAA compliance) or where high application load is incompatible with a shared public resource.

SimTK

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SimTK is a free project-hosting platform for the biomedical computation community that enables researchers to easily share their software, data, and models and provides the infrastructure so they can support and grow a community around their projects. It has over 126.656 members, hosts 1.648 projects from researchers around the world, and has had more than 2.095.783 files downloaded from it. Individuals have created SimTK projects to meet publisher and funding agencies’ software and data sharing requirements, run scientific challenges, create a collection of their community’s resources, and much more.

SIP-Archiv

SIP Archive

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SIP-Archiv is an Internet based archive and database for petrophysical data derived by Spectral Induced Polarization (SIP) measurements on sediments and consolidated rocks, building materials, man-made materials and wood. It is open for all SIP related working Groups, and the usage is free of charge for scientific purposes. Nevertheless, a simple registration is needed for both, the users and the user's institution. More details can be found on the website.

BioDare2

Biological Data Repository

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BeiDare2 is currently at beta version. All new users should try the new service as we no longer provide training for the classic BioDare. - BioDare stands for Biological Data Repository, its main focus is data from circadian experiments. BioDare is an online facility to share, store, analyse and disseminate timeseries data, focussing on circadian clock data, with browser and web service interfaces. Toolbox features include an improved, speedier FFT-NLLs routine and ROBuST’s Spectrum Resampling tool that will analyse rhythmic time series data.