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Found 19 result(s)

Open Tree of Life

Tree of Life - Evolution

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The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.

Global Land Cover Facility

GLCF

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>>>!!!<<< 2019-01: Global Land Cover Facility goes offline see https://spatialreserves.wordpress.com/2019/01/07/global-land-cover-facility-goes-offline/ ; no more access to http://www.landcover.org >>>!!!<<< The Global Land Cover Facility (GLCF) provides earth science data and products to help everyone to better understand global environmental systems. In particular, the GLCF develops and distributes remotely sensed satellite data and products that explain land cover from the local to global scales.

Ocean Biodiversity Information System

OBIS

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OBIS strives to document the ocean's diversity, distribution and abundance of life. Created by the Census of Marine Life, OBIS is now part of the Intergovernmental Oceanographic Commission (IOC) of UNESCO, under its International Oceanographic Data and Information Exchange (IODE) programme

OceanDataPortal

ODP

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<<<!!!<<< This repository is no longer available. >>>!!!>>> The programme "International Oceanographic Data and Information Exchange" (IODE) of the "Intergovernmental Oceanographic Commission" (IOC) of UNESCO was established in 1961. Its purpose is to enhance marine research, exploitation and development, by facilitating the exchange of oceanographic data and information between participating Member States, and by meeting the needs of users for data and information products.

HUGO Gene Nomenclature Committee

HGNC

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The HUGO Gene Nomenclature Committee (HGNC) assigned unique gene symbols and names to over 35,000 human loci, of which around 19,000 are protein coding. This curated online repository of HGNC-approved gene nomenclature and associated resources includes links to genomic, proteomic and phenotypic information, as well as dedicated gene family pages.

ENCODE

Encyclopedia of DNA Elements

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The ENCODE Encyclopedia organizes the most salient analysis products into annotations, and provides tools to search and visualize them. The Encyclopedia has two levels of annotations: Integrative-level annotations integrate multiple types of experimental data and ground level annotations. Ground-level annotations are derived directly from the experimental data, typically produced by uniform processing pipelines.

US Virtual Astronomical Observatory

VAO

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The US Virtual Astronomical Observatory (VAO) is the VO effort based in the US, and it is one of many VO projects currently underway worldwide. The primary emphasis of the VAO is to provide new scientific research capabilities to the astronomy community. Thus an essential component of the VAO activity is obtaining input from US astronomers about the research tools that are most urgently needed in their work, and this information will guide the development efforts of the VAO. >>>!!!<<< Funding discontinued in 2014 and all software, documentation, and other digital assets developed under the VAO are stored in the VAO Project Repository https://sites.google.com/site/usvirtualobservatory/ . Code is archived on Github https://github.com/TomMcGlynn/usvirtualobservatory . >>>!!!<<<

Reciprocal Net

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The Reciprocal Net is a distributed database used by research crystallographers to store information about molecular structures; much of the data is available to the general public. The Reciprocal Net project is still under development. Currently, there are 18 participating crystallography laboratories online. The project is funded by the National Science Foundation (NSF) and part of the National Science Digital Library. The contents of this collection will come principally from structures contributed by participating crystallography laboratories, thus providing a means for teachers, students, and the general public to connect better with current chemistry research. The Reciprocal Net's emphasis is on obtaining structures of general interest and usefulness to those several classes of digital library users.

Database of Interacting Proteins

DIP

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The DIP database catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. The data stored within the DIP database were curated, both, manually by expert curators and also automatically using computational approaches that utilize the the knowledge about the protein-protein interaction networks extracted from the most reliable, core subset of the DIP data. Please, check the reference page to find articles describing the DIP database in greater detail. The Database of Ligand-Receptor Partners (DLRP) is a subset of DIP (Database of Interacting Proteins). The DLRP is a database of protein ligand and protein receptor pairs that are known to interact with each other. By interact we mean that the ligand and receptor are members of a ligand-receptor complex and, unless otherwise noted, transduce a signal. In some instances the ligand and/or receptor may form a heterocomplex with other ligands/receptors in order to be functional. We have entered the majority of interactions in DLRP as full DIP entries, with links to references and additional information

MatrixDB

Extracellular Matrix interactions DataBase

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MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides. MatrixDB takes into account the multimetric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers). MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database. MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009

mentha

the interactome browser

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mentha archives evidence collected from different sources and presents these data in a complete and comprehensive way. Its data comes from manually curated protein-protein interaction databases that have adhered to the IMEx consortium. The aggregated data forms an interactome which includes many organisms. mentha is a resource that offers a series of tools to analyse selected proteins in the context of a network of interactions. Protein interaction databases archive protein-protein interaction (PPI) information from published articles. However, no database alone has sufficient literature coverage to offer a complete resource to investigate "the interactome". mentha's approach generates every week a consistent interactome (graph). Most importantly, the procedure assigns to each interaction a reliability score that takes into account all the supporting evidence. mentha offers eight interactomes (Homo sapiens, Arabidopsis thaliana, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli K12, Mus musculus, Rattus norvegicus, Saccharomyces cerevisiae) plus a global network that comprises every organism, including those not mentioned. The website and the graphical application are designed to make the data stored in mentha accessible and analysable to all users. Source databases are: MINT, IntAct, DIP, MatrixDB and BioGRID.

Gulf Coast Repository

GCR

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The International Ocean Discovery Program’s (IODP) Gulf Coast Repository (GCR) is located in the Research Park on the Texas A&M University campus in College Station, Texas. This repository stores DSDP, ODP, and IODP cores from the Pacific Ocean, the Caribbean Sea and Gulf of Mexico, and the Southern Ocean. A satellite repository at Rutgers University houses New Jersey/Delaware land cores 150X and 174AX.

HPDE.io

Heliophysics Data Environment Registry

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Provides quick, uncluttered access to information about Heliophysics research data that have been described with SPASE resource descriptions.

ECCAD - the GEIA database

Emissions of atmospheric Compounds & Compilation of Ancillary Data

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The main goal of the ECCAD project is to provide scientific and policy users with datasets of surface emissions of atmospheric compounds, and ancillary data, i.e. data required to estimate or quantify surface emissions. The supply of ancillary data - such as maps of population density, maps of fires spots, burnt areas, land cover - could help improve and encourage the development of new emissions datasets. ECCAD offers: Access to global and regional emission inventories and ancillary data, in a standardized format Quick visualization of emission and ancillary data Rationalization of the use of input data in algorithms or emission models Analysis and comparison of emissions datasets and ancillary data Tools for the evaluation of emissions and ancillary data ECCAD is a dynamical and interactive database, providing the most up to date datasets including data used within ongoing projects. Users are welcome to add their own datasets, or have their regional masks included in order to use ECCAD tools.

Nuclear Data Services

NDS

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Nuclear Data Services contains atomic, molecular and nuclear data sets for the development and maintenance of nuclear technologies. It includes energy-dependent reaction probabilities (cross sections), the energy and angular distributions of reaction products for many combinations of target and projectile, and the atomic and nuclear properties of excited states, and their radioactive decay data. Their main concern is providing data required to design a modern nuclear reactor for electricity production. Approximately 11.5 million nuclear data points have been measured and compiled into computerized form.

Rutgers/New Jersey Geological and Water Survey Core Repository

NJGS

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Welcome to the home page of the Rutgers/New Jersey Geological and Water Survey Core Repository. We are an official repository of the International Ocean Discovery Program (IODP), hosting Legs 150X and 174AX onshore cores drilled as part of the NJ/Mid-Atlantic Transect, and the New Jersey Geological and Water Survey (NJGWS). Cores from other ODP/IODP repositories are available through ODP. In addition to ODP/IODP cores, we are the repository for: 1. 6668 m of Newark Basin Drilling Project Triassic cores (e.g., Olsen, Kent, et al. 1996) 2. More than 10,000 m of the Army Corps of Engineers Passaic Tunnel Project Triassic and Jurassic cores 3. 1947 m of core from the Chesapeake Bay Impact Structure Deep Hole 4. Cores obtained from the Northern North Atlantic as part of the IODP Expedition 303/306 5. Cores from various rift and drift basins on the eastern and Gulf Coasts of the U.S. 6. Geological samples from the New Jersey Geological and Water Survey (NJGWS) and United States Geological Survey (USGS) including 304 m of continuous NJGWS/USGS NJ coastal plain cores.

International Laser Ranging Service

ILRS

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The International Laser Ranging Service (ILRS) provides global satellite and lunar laser ranging data and their related products to support geodetic and geophysical research activities as well as IERS products important to the maintenance of an accurate International Terrestrial Reference Frame (ITRF). The service develops the necessary global standards/specifications and encourages international adherence to its conventions. The ILRS is one of the space geodetic services of the International Association of Geodesy (IAG). The ILRS collects, merges, archives and distributes Satellite Laser Ranging (SLR) and Lunar Laser Ranging (LLR) observation data sets of sufficient accuracy to satisfy the objectives of a wide range of scientific, engineering, and operational applications and experimentation.

Dartmouth Flood Observatory

DFO

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Space-based measurement and modeling of surface water for research, humanitarian, and water management application. The Observatory detects, maps, and measures major flood events world-wide using satellite remote sensing.

International GNSS Service

IGS

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The IGS global system of satellite tracking stations, Data Centers, and Analysis Centers puts high-quality GPS data and data products on line in near real time to meet the objectives of a wide range of scientific and engineering applications and studies. The IGS collects, archives, and distributes GPS observation data sets of sufficient accuracy to satisfy the objectives of a wide range of applications and experimentation. These data sets are used by the IGS to generate the data products mentioned above which are made available to interested users through the Internet. In particular, the accuracies of IGS products are sufficient for the improvement and extension of the International Terrestrial Reference Frame (ITRF), the monitoring of solid Earth deformations, the monitoring of Earth rotation and variations in the liquid Earth (sea level, ice-sheets, etc.), for scientific satellite orbit determinations, ionosphere monitoring, and recovery of precipitable water vapor measurements.