Repository details
MatrixDB
⚠ Caution: This entry is annotated as "Offline: 2026-10-02".
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Name of repository
MatrixDB
Additional name(s)
- Extracellular Matrix interactions DataBase
Repository URL
Description
MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides.
MatrixDB takes into account the multimetric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers). MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database. MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009
Contact(s)
- administrative: sylvie.ricard-blum@univ-lyon1.fr
- administrative: https://matrixdb.univ-lyon1.fr/
Persistent identifier(s) of the repository
Repository size
242.921 Experimentally Supported Binary Interactions; 390.527 Protein-Protein Interactions; 82.035 Biomolecules
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- dataProvider
- serviceProvider
Dates
Started
2009
Offline
2026-10-02
Institutions (9)
Institution name
Additional name(s)
- ICBMS
- Université de Claude Bernard Lyon 1, Institut de Chimie et de Biochimie Moléculaires et Supramoléculaires
Country
Type(s) of responsibility
- general
Type of institution
non-profit
End date of responsibility
2016
Additional name(s)
- FP7
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
End date of responsibility
2015
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
2016
Additional name(s)
- ifb
- Institut Francais de bioinformatique
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
2016
Additional name(s)
- HUPO PSI
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- IBCP
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
End date of responsibility
2015
Additional name(s)
- IMEx
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Additional name(s)
- La Région Auvergne Rhône Alpes
- Regional Council of Auvergne-Rhône-Alpes
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
End date of responsibility
2015
Additional name(s)
- Institut Rhône-Alpin des Systèmes Complexes
- IXXI
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
End date of responsibility
2015
Policies (1)
Policy name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
Data license
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- feeRequired
Data upload license (1)
Data upload license name
Persistent identifier system(s)
- none
Versioning
yes
Data citation guideline
Enhanced publication
yes
Metadata standards (1)
Metadata standard
Remarks
Remarks
MatrixDB is partner of the International Molcular Exchange Consortium (IMEx)
Entry date
2014-03-28
Last update
2026-10-02
Cite this re3data.org record:
re3data.org: MatrixDB; editing status 2026-10-02; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3M03H last accessed: 2026-10-31-
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- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2026-10-31
