Repository details
ENCODE
Name of repository
ENCODE
Additional name(s)
- Encyclopedia of DNA Elements
- ENCODE Encyclopedia
Repository URL
Subject(s)
Description
The ENCODE Encyclopedia organizes the most salient analysis products into annotations, and provides tools to search and visualize them. The Encyclopedia has two levels of annotations:
Integrative-level annotations integrate multiple types of experimental data and ground level annotations.
Ground-level annotations are derived directly from the experimental data, typically produced by uniform processing pipelines.
Contact(s)
- administrative: https://www.encodeproject.org/help/contacts/
- administrative: encode-help@lists.stanford.edu
Keyword(s)
Persistent identifier(s) of the repository
- MIR:00000662
- RRID:SCR_015482
- FAIRsharing:10.25504/FAIRsharing.v0hbjs
- other:OMICS_00532
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- dataProvider
- serviceProvider
Institutions (3)
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Additional name(s)
- NHGRI
Institution
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Country
Type(s) of responsibility
- technical
- general
Type of institution
non-profit
Policies (2)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (2)
DataLicense
DataLicense
Data upload (1)
Type of data upload
closed
Persistent identifier system(s)
- DOI
Name of the repository software
- unknown
Versioning
yes
Data citation guideline
Enhanced Publication
yes
Quality management
yes
Application programming interfaces (1)
Type
REST
Url
documentation
Remarks
Remarks
see also: https://www.genome.gov/Funded-Programs-Projects/ENCODE-Project-ENCyclopedia-Of-DNA-Elements. The data generated by projects and participants in the pilot phase were submitted, processed, and released by the UCSC Genome Browser. The data from the pilot phase are still accessible from the pilot phase repository at UCSC https://genome.ucsc.edu/ENCODE/pilot.html.
Entry date
2019-04-26
Last update
2026-01-23
Cite this re3data.org record:
re3data.org: ENCODE; editing status 2026-01-23; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R31NJMKB last accessed: 2026-02-05-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2026-02-05
