Filter
Reset all

Subjects

Content Types

Countries

AID systems

API

Data access

Data access restrictions

Database access

Database access restrictions

Database licenses

Data licenses

Data upload

Data upload restrictions

Enhanced publication

Institution responsibility type

Institution type

Keywords

Metadata standards

PID systems

Provider types

Quality management

Repository languages

Software

Syndications

Repository types

Versioning

  • * at the end of a keyword allows wildcard searches
  • " quotes can be used for searching phrases
  • + represents an AND search (default)
  • | represents an OR search
  • - represents a NOT operation
  • ( and ) implies priority
  • ~N after a word specifies the desired edit distance (fuzziness)
  • ~N after a phrase specifies the desired slop amount
Found 56 result(s)

Dalhousie University Dataverse @ Borealis

Subject(s)
Content type(s)
Country
The Dalhousie University Dataverse is a research data repository for our faculty, students, and staff. Files are held in a secure environment on Canadian servers, hosted by Borealis.

The Cell Vision

Subject(s)
Content type(s)
Country
TheCellVision.org is a freely available and web-accessible image visualization and data browsing tool that serves as a central repository for fluorescence microscopy images and associated quantitative data produced by high-content screening experiments. Currently, TheCellVision.org hosts images and associated analysis results from two published high- content screening (HCS) projects focused on the budding yeast Saccharomyces cerevisiae. TheCellVision.org allows users to access, visualize and explore fluorescence microscopy images, and to search, compare, and extract data related to subcellular compartment morphology, protein abundance, and localization. Each dataset can be queried independently or as part of a search across multiple datasets using the advanced search option. The website also hosts computational tools associated with the available datasets, which can be applied to other projects and cell systems, a feature we demonstrate using published images of mammalian cells. Providing access to HCS data through websites such as TheCellVision.org enables new discovery and independent re-analyses of imaging data."

The Cell Map

TheCellMap

Subject(s)
Content type(s)
Country
TheCellMap.org serves as a central repository for storing and analyzing quantitative genetic interaction data produced by genome-scale Synthetic Genetic Array (SGA) experiments with the budding yeast Saccharomyces cerevisiae. In particular, TheCellMap.org allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize subnetworks, using data-driven network layouts in an intuitive and interactive manner.

COViMS

COVID-19 Infections in MS & Related Diseases

Subject(s)
Content type(s)
Country
COViMS (COVID-19 Infections in MS & Related Diseases) is a joint effort of the National MS Society, Consortium of MS Centers and Multiple Sclerosis Society of Canada to capture information on outcomes of people with MS and other CNS demyelinating diseases (Neuromyelitis Optica, or MOG antibody disease) who have developed COVID-19.

BioGRID

Biological General Repository for Interaction Datasets

Subject(s)
Content type(s)
Country
The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archives and disseminates genetic and protein interaction data from model organisms and humans. BioGRID is an online interaction repository with data compiled through comprehensive curation efforts. All interaction data are freely provided through our search index and available via download in a wide variety of standardized formats.

Canada's Michael Smith Genome Sciences Centre

GSC

Subject(s)
Content type(s)
Country
We are a leading international centre for genomics and bioinformatics research. Our mandate is to advance knowledge about cancer and other diseases, to improve human health through disease prevention, diagnosis and therapeutic approaches, and to realize the social and economic benefits of genomics research.

Open Data Commons for Spinal Cord Injury

ODC-SCI

Subject(s)
Content type(s)
Country
A community platform to Share Data, Publish Data with a DOI, and get Citations. Advancing Spinal Cord Injury research through sharing of data from basic and clinical research.

IMEx

The International Molecular Exchange Consortium

Subject(s)
Content type(s)
Country
The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly deposited interaction data or from publications in peer-reviewed journals, capture full details of an interaction in a “deep” curation model, perform a complete curation of all protein-protein interactions experimentally demonstrated within a publication, make these interaction available in a single search interface on a common website, provide the data in standards compliant download formats, make all IMEx records freely accessible under the Creative Commons Attribution License

University of Ottawa Dataverse

uOttawa Dataverse

Subject(s)
Content type(s)
Country
Data deposit is supported for University of Ottawa faculty, students, and affiliated researchers. The repository is multidisciplinary and hosted on Canadian servers. It includes features such as permanent links (DOIs) which encourage citation of your dataset and help you set terms for access and reuse of your data. uOttawa Dataverse is currently optimal for small to medium datasets.

Reactome

a curated pathway database

Subject(s)
Content type(s)
Country
Reactome is a manually curated, peer-reviewed pathway database, annotated by expert biologists and cross-referenced to bioinformatics databases. Its aim is to share information in the visual representations of biological pathways in a computationally accessible format. Pathway annotations are authored by expert biologists, in collaboration with Reactome editorial staff and cross-referenced to many bioinformatics databases. These include NCBI Gene, Ensembl and UniProt databases, the UCSC and HapMap Genome Browsers, the KEGG Compound and ChEBI small molecule databases, PubMed, and Gene Ontology.

INDEPTH Data Repository

International Network for the Demographic Evaluation of Populations and Their Health Data Repository

Subject(s)
Content type(s)
Country
INDEPTH is a global network of research centres that conduct longitudinal health and demographic evaluation of populations in low- and middle-income countries (LMICs). INDEPTH aims to strengthen global capacity for Health and Demographic Surveillance Systems (HDSSs), and to mount multi-site research to guide health priorities and policies in LMICs, based on up-to-date scientific evidence. The data collected by the INDEPTH Network members constitute a valuable resource of population and health data for LMIC countries. This repository aims to make well documented anonymised longitudinal microdata from these Centres available to data users.

Database of Religious History

DRH

Subject(s)
Content type(s)
Country
The DRH is a quantitative and qualitative encyclopedia of religious history. It consists of a variety of entry types including religious group and religious place. Scholars contribute entries on their area of expertise by answering questions in standardised polls. Answers are initially coded in the binary format Yes/No or categorically, with comment boxes for qualitative comments, references and links. Experts are able to answer both Yes and No to the same question, enabling nuanced answers for specific circumstances. Media, such as photos, can also be attached to either individual questions or whole entries. The DRH captures scholarly disagreement, through fine-grained records and multiple temporally and spatially overlapping entries. Users can visualise changes in answers to questions over time and the extent of scholarly consensus or disagreement.

NetPath

Subject(s)
Content type(s)
Country
<<<!!!<<< This repository is no longer available. >>>!!!>>> NetPath is currently one of the largest open-source repository of human signaling pathways that is all set to become a community standard to meet the challenges in functional genomics and systems biology. Signaling networks are the key to deciphering many of the complex networks that govern the machinery inside the cell. Several signaling molecules play an important role in disease processes that are a direct result of their altered functioning and are now recognized as potential therapeutic targets. Understanding how to restore the proper functioning of these pathways that have become deregulated in disease, is needed for accelerating biomedical research. This resource is aimed at demystifying the biological pathways and highlights the key relationships and connections between them. Apart from this, pathways provide a way of reducing the dimensionality of high throughput data, by grouping thousands of genes, proteins and metabolites at functional level into just several hundreds of pathways for an experiment. Identifying the active pathways that differ between two conditions can have more explanatory power than just a simple list of differentially expressed genes and proteins.

International Mouse Phenotyping Consortium

IMPC

Subject(s)
Content type(s)
Country
The IMPC is a confederation of international mouse phenotyping projects working towards the agreed goals of the consortium: To undertake the phenotyping of 20,000 mouse mutants over a ten year period, providing the first functional annotation of a mammalian genome. Maintain and expand a world-wide consortium of institutions with capacity and expertise to produce germ line transmission of targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. Test each mutant mouse line through a broad based primary phenotyping pipeline in all the major adult organ systems and most areas of major human disease. Through this activity and employing data annotation tools, systematically aim to discover and ascribe biological function to each gene, driving new ideas and underpinning future research into biological systems; Maintain and expand collaborative “networks” with specialist phenotyping consortia or laboratories, providing standardized secondary level phenotyping that enriches the primary dataset, and end-user, project specific tertiary level phenotyping that adds value to the mammalian gene functional annotation and fosters hypothesis driven research; and Provide a centralized data centre and portal for free, unrestricted access to primary and secondary data by the scientific community, promoting sharing of data, genotype-phenotype annotation, standard operating protocols, and the development of open source data analysis tools. Members of the IMPC may include research centers, funding organizations and corporations.

American Mineralogist Crystal Structure Database

AMCSD

Subject(s)
Content type(s)
Country
AMCSD is an interface to a crystal structure database that includes every structure published in the American Mineralogist, The Canadian Mineralogist, European Journal of Mineralogy and Physics and Chemistry of Minerals, as well as selected datasets from other journals. The database is maintained under the care of the Mineralogical Society of America and the Mineralogical Association of Canada, and financed by the National Science Foundation. You may search by a mineral of your choice, or choose a mineral from a complete list to help aid your research.

Canadian Biodiversity Information Facility

Système canadien d'information sur la biodiversité

Subject(s)
Content type(s)
Country
!!! <<< the repository is offline >>> !!! The CBIF provides primary data on biological species of interest to Canadians. CBIF supports a wide range of social and economic decisions including efforts to conserve our biodiversity in healthy ecosystems, use our biological resources in sustainable ways, and monitor and control pests and diseases. Tools provided by the CBIF include the Integrated Taxonomic Information System (ITIS), Species Access Network, Online Mapping, and the SpeciesBank, including Butterflies of Canada. The CBIF is a member of the Global Biodiversity Information Facility (GBIF).

Viral Bioinformatics Resource Center

VBRC

Subject(s)
Content type(s)
Country
Databases of viral genomic information (genes, gene families, and genomes), and software to perform comparative genomics analyses

OrtholugeDB

The Ortholog Database

Subject(s)
Content type(s)
Country
OrtholugeDB contains Ortholuge-based orthology predictions for completely sequenced bacterial and archaeal genomes. It is also a resource for reciprocal best BLAST-based ortholog predictions, in-paralog predictions (recently duplicated genes) and ortholog groups in Bacteria and Archaea. The Ortholuge method improves the specificity of high-throughput orthology prediction.

Cape Breton University Dataverse

Subject(s)
Content type(s)
Country
The CBU Dataverse is a research data repository for Cape Breton University. Files are held securely on Canadian servers, and can be made openly accessible to further research, gain citations and promote our world class research.

Yukon Open Data

Subject(s)
Content type(s)
Country
Government of Yukon open data provides an easy way to find, access and reuse the government's public datasets. This service brings all of the government's data together in one searchable website. Our datasets are created and managed by different government departments. We cannot guarantee the quality or timeliness of all data. If you have any feedback you can get in touch with the department that produced the dataset. This is a pilot project. We are in the process of adding a quality framework to make it easier for you to access high quality, reliable data.

University of Toronto Dataverse

Subject(s)
Content type(s)
Country
The University of Toronto Dataverse is a research data repository for our faculty, students, and staff. Files are held in a secure environment on Canadian servers. Researchers can choose to make content available publicly, to specific individuals, or to restrict access.

Lakehead University Dataverse

Subject(s)
Content type(s)
Country
Lakehead University Dataverse is the central online repository for research data at Lakehead University.

Gemma

Tools and database for meta-analysis of functional genomics data

Subject(s)
Content type(s)
Country
Gemma is a database for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles. Gemma contains data from thousands of public studies, referencing thousands of published papers. Users can search, access and visualize co-expression and differential expression results.

Xenbase

Xenopus Genomics Database

Subject(s)
Content type(s)
Country
Xenbase's mission is to provide the international research community with a comprehensive, integrated and easy to use web based resource that gives access the diverse and rich genomic, expression and functional data available from Xenopus research. Xenbase also provides a critical data sharing infrastructure for many other NIH-funded projects, and is a focal point for the Xenopus community. In addition to our primary goal of supporting Xenopus researchers, Xenbase enhances the availability and visibility of Xenopus data to the broader biomedical research community.

BioGRID ORCS

BioGRID Open Repository of CRISPR Screens

Subject(s)
Content type(s)
Country
BioGRID ORCS is an open repository of CRISPR screens compiled through comprehensive curation efforts. The current index is version 1.0.3 and searches more than 49 publications and 58,161 genes to return more than 895 CRISPR screens from 3 major model organism species and 629 cell lines. All screen data are freely provided through our search index and available via download in a wide variety of standardized formats.