Repository details

Gemma

Name of repository
Gemma
Additional name(s)
  • Tools and database for meta-analysis of functional genomics data
Repository URL
https://gemma.msl.ubc.ca/home.html
Subject(s)
Description
Gemma is a database for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles. Gemma contains data from thousands of public studies, referencing thousands of published papers. Users can search, access and visualize co-expression and differential expression results.
Contact(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
Over 16.000 curated datasets
Repository type(s)
  • disciplinary
Mission statement for designated community
https://pavlidislab.github.io/Gemma/
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider

Institutions (8)

Institution
Canadian Institutes of Health Research
Additional name(s)
  • Instituts de recherche en santé du Canada
  • IRSC
  • CIHR
Institution
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Children Neurodevelopmental Disorders Network
Additional name(s)
  • formerly: Kids Brain Health Network
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Genome British Columbia
Additional name(s)
  • Genome BC
Institution
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Government of Canada, Natural Sciences and Engineering Research Council of Canada
Additional name(s)
  • Gouvernement du Canada, Conseil de recherches en sciences naturelles et en génie du Canada
  • CRSNG
  • NSERC
Institution
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
INNOVATION.CA
Additional name(s)
  • Canada Foundation for Innovation
  • CFI
  • Fondation Canadienne pour l'innovation
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Michael Smith Health Research BC
Additional name(s)
  • MSFHR
  • formerly: Michael Smith Foundation for Health Research
Institution
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
U.S. Department of Health & Human Services, National Institutes of Health
Additional name(s)
  • HHS, NIH
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
University of British Columbia, Pavlidis lab
Additional name(s)
  • UBC, Pavlidis lab
Country
Canada
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit

Policies (1)

Policy Name
Terms And Conditions

Database access

Type of access to research data repository
open

Database licenses (1)

Database License
Apache License 2.0

Data access (2)

Type of access to data
open
Type of access to data
restricted
Data access restriction type(s)
  • other

Data licenses (1)

DataLicense
Copyrights

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration

Data upload license (1)

Data upload license name
Uploading Data to the Gemma Website
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Data citation guideline
https://pavlidislab.github.io/Gemma/
Enhanced Publication
yes
Quality management
yes

Application programming interfaces (1)

Type
REST
Url
https://gemma.msl.ubc.ca/resources/restapidocs/

Alerting services (1)

Type of alerting service
RSS

Remarks

Remarks
Gemma on GitHub: https://github.com/PavlidisLab/Gemma
Entry date
2018-07-05
Last update
2024-01-18
Back to search
Submit a change request
Get a badge
The DataCite logo

Cite this re3data.org record:

re3data.org: Gemma; editing status 2024-01-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36R54 last accessed: 2025-04-25