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Found 218 result(s)

Bioconductor

Open Source Software for Bioinformatics

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Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.

VegBank

The Vegetation Plot Archive Project

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VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain the actual plot records, vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. VegBank receives its data from the VegBank community of users.

UC San Diego Library Digital Collections

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The UC San Diego Library Digital Collections website gathers two categories of content managed by the Library: library collections (including digitized versions of selected collections covering topics such as art, film, music, history and anthropology) and research data collections (including research data generated by UC San Diego researchers).

Reactome

a curated pathway database

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Reactome is a manually curated, peer-reviewed pathway database, annotated by expert biologists and cross-referenced to bioinformatics databases. Its aim is to share information in the visual representations of biological pathways in a computationally accessible format. Pathway annotations are authored by expert biologists, in collaboration with Reactome editorial staff and cross-referenced to many bioinformatics databases. These include NCBI Gene, Ensembl and UniProt databases, the UCSC and HapMap Genome Browsers, the KEGG Compound and ChEBI small molecule databases, PubMed, and Gene Ontology.

Duke Research Data Repository

Duke RDR

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The Duke Research Data Repository is a service of the Duke University Libraries that provides curation, access, and preservation of research data produced by the Duke community. Duke's RDR is a discipline agnostic institutional data repository that is intended to preserve and make public data related to the teaching and research mission of Duke University including data linked to a publication, research project, and/or class, as well as supplementary software code and documentation used to provide context for the data.

NOAA Antarctic UV Monitoring Network

formerly: National Science Foundation Polar Programs UV Monitoring Network

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The National Science Foundation (NSF) Ultraviolet (UV) Monitoring Network provides data on ozone depletion and the associated effects on terrestrial and marine systems. Data are collected from 7 sites in Antarctica, Argentina, United States, and Greenland. The network is providing data to researchers studying the effects of ozone depletion on terrestrial and marine biological systems. Network data is also used for the validation of satellite observations and for the verification of models describing the transfer of radiation through the atmosphere.

Ensembl Metazoa

e!EnsemblMetazoa

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Ensembl Metazoa is a genome-centric portal for metazoan species of scientific interest.

Barbara A. Mikulski Archive for Space Telescopes

MAST

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The Mikulski Archive for Space Telescopes (MAST) is a NASA funded project to support and provide to the astronomical community a variety of astronomical data archives, with the primary focus on scientifically related data sets in the optical, ultraviolet, and near-infrared parts of the spectrum. MAST is located at the Space Telescope Science Institute (STScI).

Environmental Dataset Gateway

EPA's official open data catalog

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<<<!!!<<< This repository is no longer available. The Environmental Dataset Gateway (EDG) has provided access to EPA's Open Data resources. Metadata records contributed by EPA Regions, Program Offices, and Research Laboratories that link to geospatial and non-geospatial resources (e.g., data, Web services, or applications) are now discoverable through Data.gov. https://www.re3data.org/repository/r3d100010078 >>>!!!>>>

Encyclopedia of Life

eol

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Our knowledge of the many life-forms on Earth - of animals, plants, fungi, protists and bacteria - is scattered around the world in books, journals, databases, websites, specimen collections, and in the minds of people everywhere. Imagine what it would mean if this information could be gathered together and made available to everyone – anywhere – at a moment’s notice. This dream is becoming a reality through the Encyclopedia of Life.

Mouse Genome Informatics

MGI

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MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. The projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, MouseMine Project, MouseCyc Project at MGI

ASU Library Research Data Repository

Arizona State University Dataverse

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The Arizona State University (ASU) Research Data Repository provides a platform for ASU-affiliated researchers to share, preserve, cite, and make research data accessible and discoverable. The ASU Research Data Repository provides a permanent digital identifier for research data, which complies with data sharing policies. The repository is powered by the Dataverse open-source application, developed and used by Harvard University. Both the ASU Research Data Repository and the KEEP Institutional Repository are managed by the ASU Library to ensure research produced at Arizona State University is discoverable and accessible to the global community.

Inspire-HEP

Inspire-High Energy Physics

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CERN, DESY, Fermilab and SLAC have built the next-generation High Energy Physics (HEP) information system, INSPIRE. It combines the successful SPIRES database content, curated at DESY, Fermilab and SLAC, with the Invenio digital library technology developed at CERN. INSPIRE is run by a collaboration of CERN, DESY, Fermilab, IHEP, IN2P3 and SLAC, and interacts closely with HEP publishers, arXiv.org, NASA-ADS, PDG, HEPDATA and other information resources. INSPIRE represents a natural evolution of scholarly communication, built on successful community-based information systems, and provides a vision for information management in other fields of science.

WRMC-BSRN

Baseline Surface Radiation Network

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BSRN is a project of the Radiation Panel (now the Data and Assessment Panel) from the Global Energy and Water Cycle Experiment (GEWEX) under the umbrella of the World Climate Research Programme (WCRP). It is the global baseline network for surface radiation for the Global limate Observing System (GCOS), contributing to the Global Atmospheric Watch (GAW), and forming a ooperative network with the Network for the Detection of Atmospheric Composition Change NDACC).

UCLA Dataverse

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UCLA Library is adopting Dataverse, the open source web application designed for sharing, preserving and using research data. UCLA Dataverse will allow data, text, software, scripts, data visualizations, etc., created from research projects at UCLA to be made publicly available, widely discoverable, linkable, and ultimately, reusable

SumsDB

Surface management system database

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<<!! checked 20.03.2017 SumsDB was offline; for more information and archive see http://brainvis.wustl.edu/sumsdb/ >> SumsDB (the Surface Management System DataBase) is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories.

Advanced Cooperative Arctic Data and Information Service

ACADIS Gateway

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>>>>!!!<<<<As of March 28, 2016, the 'NSF Arctic Data Center' will serve as the current repository for NSF-funded Arctic data. The ACADIS Gateway http://www.aoncadis.org is no longer accepting data submissions. All data and metadata in the ACADIS system have been transferred to the NSF Arctic Data Center system. There is no need for you to resubmit existing data. >>>>!!!<<<< ACADIS is a repository for Arctic research data to provide data archival, preservation and access for all projects funded by NSF's Arctic Science Program (ARC). Data include long-term observational timeseries, local, regional, and system-scale research from many diverse domains. The Advanced Cooperative Arctic Data and Information Service (ACADIS) program includes data management services.

DisProt

Database of Protein Disorder

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The Database of Protein Disorder (DisProt) is a curated database that provides information about proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part. DisProt is a community resource annotating protein sequences for intrinsically disorder regions from the literature. It classifies intrinsic disorder based on experimental methods and three ontologies for molecular function, transition and binding partner.

Health and Retirement Study

HRS

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The Health and Retirement Study (HRS) is a longitudinal panel study that surveys a representative sample of more than 26,000 Americans over the age of 50 every two years. The study has collected information about income, work, assets, pension plans, health insurance, disability, physical health and functioning, cognitive functioning, genetic information and health care expenditures.

Ensembl Plants

e!EnsemblPlants

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EnsemblPlants is a genome-centric portal for plant species. Ensembl Plants is developed in coordination with other plant genomics and bioinformatics groups via the EBI's role in the transPLANT consortium.

GIS Data Depot

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The repository is no longer available. >>>!!!<<< 2018-09-14: no more access to GIS Data Depot >>>!!!<<<

OEDI

Open Energy Data Initiative

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OEDI is a centralized repository of high-value energy research datasets aggregated from the U.S. Department of Energy’s Programs, Offices, and National Laboratories. Built to enable data discoverability, OEDI facilitates access to a broad network of findings, including the data available in technology-specific catalogs like the Geothermal Data Repository and Marine Hydrokinetic Data Repository.

Genomic Observatories MetaDatabase

GEOME

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The Genomic Observatories Meta-Database (GEOME) is a web-based database that captures the who, what, where, and when of biological samples and associated genetic sequences. GEOME helps users with the following goals: ensure the metadata from your biological samples is findable, accessible, interoperable, and reusable; improve the quality of your data and comply with global data standards; and integrate with R, ease publication to NCBI's sequence read archive, and work with an associated LIMS. The initial use case for GEOME came from the Diversity of the Indo-Pacific Network (DIPnet) resource.

Cape Breton University Dataverse

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The CBU Dataverse is a research data repository for Cape Breton University. Files are held securely on Canadian servers, and can be made openly accessible to further research, gain citations and promote our world class research.

U.S. Energy Information Administration

EIA

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The U.S. Energy Information Administration (EIA) collects, analyzes, and disseminates independent and impartial energy information to promote sound policymaking, efficient markets, and public understanding of energy and its interaction with the economy and the environment.