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Found 125 result(s)
FungiDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB was first released in early 2011 as a collaborative project between EuPathDB and the group of Jason Stajich (University of California, Riverside). At the end of 2015, FungiDB was integrated into the EuPathDB bioinformatic resource center. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining.
OrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences. It provides not only groups shared by two or more species/genomes, but also groups representing species-specific gene expansion families. So it serves as an important utility for automated eukaryotic genome annotation. OrthoMCL starts with reciprocal best hits within each genome as potential in-paralog/recent paralog pairs and reciprocal best hits across any two genomes as potential ortholog pairs. Related proteins are interlinked in a similarity graph. Then MCL (Markov Clustering algorithm,Van Dongen 2000; www.micans.org/mcl) is invoked to split mega-clusters. This process is analogous to the manual review in COG construction. MCL clustering is based on weights between each pair of proteins, so to correct for differences in evolutionary distance the weights are normalized before running MCL.
The Duke Research Data Repository is a service of the Duke University Libraries that provides curation, access, and preservation of research data produced by the Duke community. Duke's RDR is a discipline agnostic institutional data repository that is intended to preserve and make public data related to the teaching and research mission of Duke University including data linked to a publication, research project, and/or class, as well as supplementary software code and documentation used to provide context for the data.
The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system was developed to share data across the entire TBI research field and to facilitate collaboration between laboratories, as well as interconnectivity with other informatics platforms. Sharing data, methodologies, and associated tools, rather than summaries or interpretations of this information, can accelerate research progress by allowing re-analysis of data, as well as re-aggregation, integration, and rigorous comparison with other data, tools, and methods. This community-wide sharing requires common data definitions and standards, as well as comprehensive and coherent informatics approaches.
The Environmental Data Initiative Repository concentrates on studies of ecological processes that play out at time scales spanning decades to centuries including those of the NSF Long Term Ecological Research (LTER) program, the NSF Macrosystems Biology Program, the NSF Long Term Research in Environmental Biology (LTREB) program, the Organization of Biological Field Stations, and others. The repository hosts data that provide a context to evaluate the nature and pace of ecological change, to interpret its effects, and to forecast the range of future biological responses to change.
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The BCDC serves the research data obtained, and the data syntheses assembled, by researchers within the Bjerknes Centre for Climate Research. Furthermore it is open for all interested scientists independent of institution. All data from the different disciplines (e.g. geology, oceanography, biology, model community) will be archived in a long-term repository, interconnected and made publicly available by the BCDC. BCDC has collaborations with many international data repositories and actively archives metadata and data at those ensuring quality and FAIRness. BCDC has it's main focus on services for data management for external and internal funded projects in the field of climate research, provides data management plans and ensures that data is archived accordingly according to the best practices in the field. The data management services rank from project work for small external funded project to top-of-the-art data management services for research infrastructures on the ESFRI roadmap (e.g. RI ICOS – Integrated Carbon Observation System) and for provides products and services for Copernicus Marine Environmental Monitoring Services. In addition BCDC is advising various communities on data management services e.g. IOC UNESCO, OECD, IAEA and various funding agencies. BCDC will become an Associated Data Unit (ADU) under IODE, International Oceanographic Data and Information Exchange, a worldwide network that operates under the auspices of the Intergovernmental Oceanographic Commission of UNESCO and aims at becoming a part of ICSU World Data System.
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The Repositori Ilmiah Nasional (RIN) is a means for storing, preserving, citing, analyzing and sharing research data. RIN acts as an online media in managing, storing and sharing research data. Researchers, data writers, publishers, data distributors, and affiliated institutions all receive academic credit and web visibility. Researchers, agencies, and funders have full control over research data.
DASS-BiH (Data Archive for Social Sciences in Bosnia and Herzegovina) is the national service whose role is to ensure long-term preservation and dissemination of social science research data. The purpose of the data archive is to provide a vital research data resource for researchers, teachers, students, and all other interested users.
ARCHE (A Resource Centre for the HumanitiEs) is a service aimed at offering stable and persistent hosting as well as dissemination of digital research data and resources for the Austrian humanities community. ARCHE welcomes data from all humanities fields. ARCHE is the successor of the Language Resources Portal (LRP) and acts as Austria’s connection point to the European network of CLARIN Centres for language resources.
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TU Data is an institutional repository of TU Wien to enable storing, sharing and publishing of digital objects, in particular research data. It facilitates the funders' requirements for open access to research data and the FAIR principles by making research output findable, accessible, interoperable and re-usable. This service is developed by the TU Wien Center for Research Data Management and hosted by TU.it.
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The Federated Research Data Repository (FRDR) is a place for Canadian researchers to deposit and share research data and to facilitate discovery of research data in Canadian repositories. Le Dépôt fédéré de données de recherche (DFDR) est une place où les chercheurs canadiens peuvent déposer et partager des données de recherche et faciliter la découverte de données de recherche dans des dépôts canadiens.
Yoda publishes research data on behalf of researchers that are affiliated with Utrecht University, its research institutes and consortia where it acts as a coordinating body. Data packages are not limited to a particular field of research or license. Yoda publishes data packages via Datacite. To find data publications use: https://public.yoda.uu.nl/ , or the Datacite search engine: https://search.datacite.org/repositories/delft.uu
EBRAINS offers one of the most comprehensive platforms for sharing brain research data ranging in type as well as spatial and temporal scale. We provide the guidance and tools needed to overcome the hurdles associated with sharing data. The EBRAINS data curation service ensures that your dataset will be shared with maximum impact, visibility, reusability, and longevity, https://ebrains.eu/services/data-knowledge/share-data. Find data - the user interface of the EBRAINS Knowledge Graph - allows you to easily find data of interest. EBRAINS hosts a wide range of data types and models from different species. All data are well described and can be accessed immediately for further analysis.
This is the place where Eawag scientists publish their research data. Research data is organized in Packages which contain one or more Resources. Resources are usually files containing research data proper or ancillary information such as a README-file. A URL pointing to external information might also constitute a Resource.
ToxoDB is a genome database for the genus Toxoplasma, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including toxoplasmosis.
AmoebaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. In its first iteration (released in early 2010), AmoebaDB contains the genomes of three Entamoeba species (see below). AmoebaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers . The database includes supplemental bioinformatics analyses and a web interface for data-mining.
The Maize Genetics and Genomics Database focuses on collecting data related to the crop plant and model organism Zea mays. The project's goals are to synthesize, display, and provide access to maize genomics and genetics data, prioritizing mutant and phenotype data and tools, structural and genetic map sets, and gene models. MaizeGDB also aims to make the Maize Newsletter available, and provide support services to the community of maize researchers. MaizeGDB is working with the Schnable lab, the Panzea project, The Genome Reference Consortium, and iPlant Collaborative to create a plan for archiving, dessiminating, visualizing, and analyzing diversity data. MMaizeGDB is short for Maize Genetics/Genomics Database. It is a USDA/ARS funded project to integrate the data found in MaizeDB and ZmDB into a single schema, develop an effective interface to access this data, and develop additional tools to make data analysis easier. Our goal in the long term is a true next-generation online maize database.aize genetics and genomics database.
CESSDA catalogue provides access to the national social science data archives of the CESSDA members across Europe. Having evolved from a network of European data service providers into a legal entity and large-scale infrastructure under the auspices of the European Strategy Forum on Research Infrastructures (ESFRI) it became an ERIC (European Research Infrastructure) in June 2017.
The Odum Institute Archive Dataverse contains social science data curated and archived by the Odum Institute Data Archive at the University of North Carolina at Chapel Hill. Some key collections include the primary holdings of the Louis Harris Data Center, the National Network of State Polls, and other Southern-focused public opinion data. Please note that some datasets in this collection are restricted to University of North Carolina at Chapel Hill affiliates. Access to these datasets require UNC ONYEN institutional login to the Dataverse system.
Giardia lamblia is a significant, environmentally transmitted, human pathogen and an amitochondriate protist. It is a major contributor to the enormous worldwide burden of human diarrheal diseases, yet the basic biology of this parasite is not well understood. No virulence factor has been identified. The Giardia lamblia genome contains only 12 million base pairs distributed onto five chromosomes. Its analysis promises to provide insights about the origins of nuclear genome organization, the metabolic pathways used by parasitic protists, and the cellular biology of host interaction and avoidance of host immune systems. Since the divergence of Giardia lamblia lies close to the transition between eukaryotes and prokaryotes in universal ribosomal RNA phylogenies, it is a valuable, if not unique, model for gaining basic insights into genetic innovations that led to formation of eukaryotic cells. In evolutionary terms, the divergence of this organism is at least twice as ancient as the common ancestor for yeast and man. A detailed study of its genome will provide insights into an early evolutionary stage of eukaryotic chromosome organization as well as other aspects of the prokaryotic / eukaryotic divergence.
VectorBase provides data on arthropod vectors of human pathogens. Sequence data, gene expression data, images, population data, and insecticide resistance data for arthropod vectors are available for download. VectorBase also offers genome browser, gene expression and microarray repository, and BLAST searches for all VectorBase genomes. VectorBase Genomes include Aedes aegypti, Anopheles gambiae, Culex quinquefasciatus, Ixodes scapularis, Pediculus humanus, Rhodnius prolixus. VectorBase is one the Bioinformatics Resource Centers (BRC) projects which is funded by National Institute of Allergy and Infectious Diseases (NAID).