Repository details

FungiDB

Name of repository
FungiDB
Additional name(s)
  • The Fungal and Oomycete Genomics Resource
Repository URL
https://fungidb.org/fungidb/app
Subject(s)
Description
FungiDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB was first released in early 2011 as a collaborative project between EuPathDB and the group of Jason Stajich (University of California, Riverside). At the end of 2015, FungiDB was integrated into the EuPathDB bioinformatic resource center. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining.
Contact(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
663 datasets
Repository type(s)
  • disciplinary
Mission statement for designated community
https://fungidb.org/fungidb/app/static-content/about.html
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider

Institutions (5)

Institution
Burroughs Wellcome Fund
Additional name(s)
  • BWF
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
National Institutes of Health, National Institute of Allergy and Infectious Diseases, Bioinformatics Resource Centers
Additional name(s)
  • BRC
  • NIAID
Country
United States
Type(s) of responsibility
  • technical
  • funding
Type of institution
non-profit
Institution
University of California, Department of Microbiology and Plant Pathology
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
University of Georgia
Institution
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
University of Pennsylvania
Institution
Country
United States
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit

Policies (2)

Policy Name
Data Access Policy
Policy Name
NIAID/Division of Microbiology and Infectious Diseases (DMID) Data Sharing and Release Guidelines

Database access

Type of access to research data repository
open

Database licenses (1)

Database License
other

Data access (2)

Type of access to data
open
Type of access to data
embargoed

Data licenses (2)

DataLicense
Public Domain
DataLicense
other

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration
  • other

Data upload license (1)

Data upload license name
Data Submission and Release on EuPathDB Databases
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Data citation guideline
https://fungidb.org/fungidb/showXmlDataContent.do?name=XmlQuestions.About#citing
Enhanced Publication
yes
Quality management
yes

Application programming interfaces (1)

Type
REST
Url
https://fungidb.org/fungidb/app/static-content/content/FungiDB/webServices.html

Metadata standards (1)

Metadata standard
Repository-Developed Metadata Schemas

Remarks

Remarks
is covered by Elsevier. Fungi DB is a EuPathDB Project. University of Pennsylvania is one of Bioinformatics Resource Centers awarded by NIAID to provide data, tools and services which can be accessed through publicly available sites.
Entry date
2015-12-22
Last update
2023-11-08
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Cite this re3data.org record:

re3data.org: FungiDB; editing status 2023-11-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35K9M last accessed: 2025-04-25