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Found 189 result(s)

ORegAnno

Open regulatory annotation database

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<<<!!!<<< 2017-06-02: We recently suffered a server failure and are working to bring the full ORegAnno website back online. In the meantime, you may download the complete database here: http://www.oreganno.org/dump/ ; Data are also available through UCSC Genome Browser (e.g., hg38 -> Regulation -> ORegAnno) https://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=686342163_2it3aVMQVoXWn0wuCjkNOVX39wxy&c=chr1&g=oreganno >>>!!!>>> The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known regulatory elements from scientific literature. Annotation is collected from users worldwide for various biological assays and is automatically cross-referenced against PubMED, Entrez Gene, EnsEMBL, dbSNP, the eVOC: Cell type ontology, and the Taxonomy database, where appropriate, with information regarding the original experimentation performed (evidence). ORegAnno further provides an open validation process for all regulatory annotation in the public domain. Assigned validators receive notification of new records in the database and are able to cross-reference the citation to ensure record integrity. Validators have the ability to modify any record (deprecating the old record and creating a new one) if an error is found. Further, any contributor to the database can comment on any annotation by marking errors, or adding special reports into function as they see fit. These features of ORegAnno ensure that the collection is of the highest quality and uniquely provides a dynamic view of our changing understanding of gene regulation in the various genomes.

Federated Research Data Repository

Dépôt fédéré de données de recherche

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The Federated Research Data Repository (FRDR) is a bilingual publishing platform for sharing and preserving Canadian research data. It is a curated, general-purpose repository, custom built for large datasets.

Borealis

Borealis, the Canadian Dataverse Repository

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Borealis, the Canadian Dataverse Repository, is a bilingual, multidisciplinary, secure, Canadian research data repository, supported by academic libraries and research institutions across Canada. Borealis supports open discovery, management, sharing, and preservation of Canadian research data. Borealis is available to researchers who are affiliated with a participating Canadian university or research organization and their collaborators. Borealis is a shared service provided in partnership with Canadian regional academic library consortia, institutions, research organizations, and the Digital Research Alliance of Canada, with technical infrastructure hosted by Scholars Portal and the University of Toronto Libraries.

University of Prince Edward Island Data (Beta)

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Built on the Islandora digital repository framework, the UPEI hosted Published and Archived Data (data.upei.ca) service provides researchers with a place to securely publish or archive their research datasets.

CyberCell Database

CCDB

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The CyberCell database (CCDB) is a comprehensive collection of detailed enzymatic, biological, chemical, genetic, and molecular biological data about E. coli (strain K12, MG1655). It is intended to provide sufficient information and querying capacity for biologists and computer scientists to use computers or detailed mathematical models to simulate all or part of a bacterial cell at a nanoscopic (10-9 m), mesoscopic (10-8 m).The CyberCell database CCDB actually consists of 4 browsable databases: 1) the main CyberCell database (CCDB - containing gene and protein information), 2) the 3D structure database (CC3D – containing information for structural proteomics), 3) the RNA database (CCRD – containing tRNA and rRNA information), and 4) the metabolite database (CCMD – containing metabolite information). Each of these databases is accessible through hyperlinked buttons located at the top of the CCDB homepage. All CCDB sub-databases are fully web enabled, permitting a wide variety of interactive browsing, search and display operations. and microscopic (10-6 m) level.

Avian Knowledge Network

AKN

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The Avian Knowledge Network (AKN) is an international network of governmental and non-governmental institutions and individuals linking avian conservation, monitoring and science through efficient data management and coordinated development of useful solutions using best-science practices based on the data.

NeuroElectro

organizing information on cellular neurophysiology

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The goal of the NeuroElectro Project is to extract information about the electrophysiological properties (e.g. resting membrane potentials and membrane time constants) of diverse neuron types from the existing literature and place it into a centralized database.

Canine Inherited Disorders Database

CIDD

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The Canine Inherited Disorders Database (CIDD) is a joint initiative of the Sir James Dunn Animal Welfare Centre at the Atlantic Veterinary College, University of Prince Edward Island, and the Canadian Veterinary Medical Association. The goals of the database are to reduce the incidence of inherited disorders in dogs by providing information to owners and breeders, and to facilitate the best management possible of these conditions by providing current information to veterinarians.

Ontario Reptile and Amphibian Atlas

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Reptiles and amphibians are collectively known as herpetofauna and are a unique part of Ontario’s biodiversity. An earlier atlas, called the Ontario Herpetofaunal Summary Atlas, provided extensive information about where many of the province’s reptiles and amphibians occurred. The Atlas is transitioning into a new era, with Ontario Nature wrapping-up the data collection phase of this project as of December 1, 2019. Now that we have discontinued our app and online form, we encourage you to continue submitting any future observations through the ‘Herps of Ontario’ project (https://www.inaturalist.org/projects/herps-of-ontario) on iNaturalist or directly to the Natural Heritage Information Centre (nhicrequests@ontario.ca) for species at risk. To learn more about the transition, read our blog (https://ontarionature.org/ontario-reptile-and-amphibian-atlas-changes/)

The Centre for Applied Genomics Databases

TCAG Databases

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The Centre for Applied Genomics hosts a variety of databases related to ongoing supported projects. Curation of these databases is performed in-house by TCAG Bioinformatics staff. The Autism Chromosome Rearrangement Database, The Cystic Fibrosis Mutation Database, TThe Lafora Progressive Myoclonus Epilepsy Mutation and Polymorphism Database are included. Large Scale Genomics Research resources include, the Database of Genomic Variants, The Chromosome 7 Annotation Project, The Human Genome Segmental Duplication Database, and the Non-Human Segmental Duplication Database

Trent University Dataverse

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Trent University Dataverse is a research data repository for our faculty, students and staff. Files are held in a secure environment on Canadian servers. The platform makes it possible for researchers to deposit data, create appropriate metadata, and version documents as they work. Researchers can choose to make content available publicly, to specific individuals, or to keep it locked.

GeneMANIA

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GeneMANI helps you predict the function of your favourite genes and gene sets. GeneMania, a real-time multiple association network integration algorithm for predicting gene function.

Prospered Project

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Policy-relevant observational studies for population health equity and responsible development. High-quality statistical information adult and children's health from the UN's Demographic and Health Surveys (DHS) program and UNICEF's Multiple Indicator Cluster Surveys (MICS). These datasets contain longitudinal information dating back to 1995 or 1999 for a series of social policies in up to 193 UN countries. DHS data variables include fertility, family planning and nutritional status for women aged 15-49 and young children, as well as demographic information on household structure, employment, education, wealth, and place of residence. MICS data includes information on nutritional status and child mortality, medical care during the antenatal and postnatal periods, and sibling maternal mortality, among others.

Halifax Open Data

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As part of Halifax Regional Municipality’s commitment to improving citizen engagement and enhancing transparency and accountability to its residents, the municipality is pleased to provide public access to its data. Open Data is a permanent service provided to citizens and businesses to access data free of charge in machine readable format.

University of Victoria Dataverse

UVic Dataverse

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The University of Victoria Dataverse is a research data repository for our faculty, researchers, and students. It is a general repository, suitable for all disciplines, and accepts a wide range of data types and formats. All deposited files are held in a secure environment on Canadian servers, and depositors can choose to make content available publicly, to specific individuals, or to keep it locked.

Maple Ridge Open Government Portal

OGP

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Anyone can use open data from the Maple Ridge Open Data Portal at no cost. Download raw data and share your insights with your community or build new applications that serve specific users

Wildtrax

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WildTrax is an online platform for storing, managing, and sharing environmental sensor Data. WildTrax was created through a partnership between the University of Alberta, Dr. Erin Bayne and the Bioacoustic Unit, the Alberta Biodiversity Monitoring Institute (ABMI), and Environment and Climate Change Canada (ECCC)

Saskatchewan Conservation Data Centre

SKCDC

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The SKCDC collects information on wild species and relies on submissions of observations from across the province of Saskatchewan. This data is used to inform biodiversity conservation efforts. The Saskatchewan Conservation Data Centre manages observation records for plants, animals, insects and special features of biodiversity.

Dataverse de l'Institut national de la recherche scientifique

Dataverse de l'INRS

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This collection is the institutional data repository reserved for the entire research community of the Institut national de la recherche scientifique (INRS).

Dataverse de l'Université du Québec à Chicoutimi

Dataverse de l'UQAC

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This dataverse is the institutional data repository reserved for the entire research community of for UQAC researchers.

McGill University Dataverse

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The McGill University Dataverse is a research data repository for McGill faculty, students, and staff. Files are held in a secure environment on Canadian servers.

Vancouver Island University Dataverse

VIU Dataverse

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The Vancouver Island University Dataverse is part of Borealis, the Canadian Dataverse Repository, and is a research data repository for VIU faculty, students, and staff. Files are held in a secure environment on Canadian servers. Researchers can choose to make content available to the public, to specific individuals, or to keep it locked.

NB Institute for Research, Data and Training

NB-IRDT

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NB-IRDT is expanding research potential through pseudonymised, linkable data sets. Our repository includes a growing collection to meet diverse research needs. We only host pseudonymous data in the NB-IRDT repository. NB-IRDT also offers public use data sets, which consist of de-identified data that is publicly accessible. All our data can be accessed in the NB-IRDT lab spaces.

Dataverse de l'Université Laval

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This Dataverse is an institutional data repository reserved for the Laval University community.

Western University Dataverse

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Western University's Dataverse is a research data repository for our faculty, students, and staff. Files are held in a secure environment on Canadian servers. Researchers can choose to make content available publicly, to specific individuals, or to keep it locked.