Repository details
CyberCell Database
Name of repository
CyberCell Database
Additional name(s)
- CCDB
- CCDB
Repository URL
Subject(s)
Description
<<<!!!<<< This repository is no longer updated >>>!!!>>>
Repository size
4.252 protein coding genes; 478 x-ray structures; 65 NMR structures; 770 model structures; 2.976 without 3D structures; 2.790 cytoplasmic proteins; 152 periplasmic proteins; 1.053 membrane proteins; 297 essential genes; 2.052 non essential genes; 4.190 translated proteins, 3.810 post-translated proteins; 7.941 Translated + Mature Proteins;
Repository type(s)
- disciplinary
Research data repository language(s)
- English
Data and/or service provider
- dataProvider
Institutions (3)
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
2004
Additional name(s)
- UAlberta
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Start date of responsibility
2004
Additional name(s)
- Diversification de l'économie de l'Ouest Canada
- WD
- DEO
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
2004
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Database licenses (1)
Database License
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- feeRequired
Persistent identifier system(s)
- DOI
Name of the repository software
- unknown
Versioning
yes
Data citation guideline
Quality management
yes
Remarks
Remarks
The CyberCell database (CCDB) is a comprehensive collection of detailed enzymatic, biological, chemical, genetic, and molecular biological data about E. coli (strain K12, MG1655). It is intended to provide sufficient information and querying capacity for biologists and computer scientists to use computers or detailed mathematical models to simulate all or part of a bacterial cell at a nanoscopic (10-9 m), mesoscopic (10-8 m).The CyberCell database CCDB actually consists of 4 browsable databases: 1) the main CyberCell database (CCDB - containing gene and protein information), 2) the 3D structure database (CC3D – containing information for structural proteomics), 3) the RNA database (CCRD – containing tRNA and rRNA information), and 4) the metabolite database (CCMD – containing metabolite information). Each of these databases is accessible through hyperlinked buttons located at the top of the CCDB homepage. All CCDB sub-databases are fully web enabled, permitting a wide variety of interactive browsing, search and display operations. and microscopic (10-6 m) level. Project CyberCell is also part of the International E. coli Alliance, an multi-national project aimed at coordinating E. coli simulation and E. coli bioinformatics efforts across Canada (Project CyberCell), the US (EMC2), Japan (E-Cell) and the European Community (SiliconCell, GSK)
Entry date
2012-12-06
Last update
2024-12-13
Cite this re3data.org record:
re3data.org: CyberCell Database; editing status 2024-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3B018 last accessed: 2025-05-08- Current projects
- EOSC FAIR-IMPACT
-
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.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2025-05-08
