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Found 40 result(s)

Alvin Frame-Grabber System

AlvinFG System

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The Alvin Frame-Grabber system provides the NDSF community on-line access to Alvin's video imagery co-registered with vehicle navigation and attitude data for shipboard analysis, planning deep submergence research cruises, and synoptic review of data post-cruise. The system is built upon the methodology and technology developed for the JasonII Virtual Control Van and a prototype system that was deployed on 13 Alvin dives in the East Pacific Rise and the Galapagos (AT7-12, AT7-13). The deployed prototype system was extremely valuable in facilitating real-time dive planning, review, and shipboard analysis.

APID

Agile Protein Interactomes DataServer

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APID Interactomes is a database that provides a comprehensive collection of protein interactomes for more than 400 organisms based in the integration of known experimentally validated protein-protein physical interactions (PPIs). Construction of the interactomes is done with a methodological approach to report quality levels and coverage over the proteomes for each organism included. In this way, APID provides interactomes from specific organisms that in 25 cases have more than 500 proteins. As a whole APID includes a comprehensive compendium of 90,379 distinct proteins and 678,441 singular interactions. The analytical and integrative effort done in APID unifies PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. In this way, 8,388 structures have been analyzed to find specific protein-protein interactions reported with details of their molecular interfaces. APID also includes a new data visualization web-tool that allows the construction of sub-interactomes using query lists of proteins of interest and the visual exploration of the corresponding networks, including an interactive selection of the properties of the interactions (i.e. the reliability of the "edges" in the network) and an interactive mapping of the functional environment of the proteins (i.e. the functional annotations of the "nodes" in the network).

ASAP

A systematic annotation package for community analysis of genomes

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ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and gene expression data collected by or in collaboration with researchers at the University of Wisconsin - Madison. ASAP was designed to facilitate ongoing community annotation of genomes and to grow with genome projects as they move from the preliminary data stage through post-sequencing functional analysis. The ASAP database includes multiple genome sequences at various stages of analysis, and gene expression data from preliminary experiments.

Avibase

the world bird database

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Avibase is an extensive database information system about all birds of the world, containing over 60 million records about 10,000 species and 22,000 subspecies of birds, including distribution information, taxonomy, synonyms in several languages and more. This site is managed by Denis Lepage and hosted by Bird Studies Canada, the Canadian copartner of Birdlife International. Avibase has been a work in progress since 1992 and I am now pleased to offer it as a service to the bird-watching and scientific community.

B2SAFE

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B2SAFE is a robust, safe and highly available service which allows community and departmental repositories to implement data management policies on their research data across multiple administrative domains in a trustworthy manner. A solution to: provide an abstraction layer which virtualizes large-scale data resources, guard against data loss in long-term archiving and preservation, optimize access for users from different regions, bring data closer to powerful computers for compute-intensive analysis

B2SHARE

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B2SHARE is a user-friendly, reliable and trustworthy way for researchers, scientific communities and citizen scientists to store and share small-scale research data from diverse contexts and disciplines. B2SHARE is able to add value to your research data via (domain tailored) metadata, and assigning citable Persistent Identifiers PIDs (Handles) to ensure long-lasting access and references. B2SHARE is one of the B2 services developed via EUDAT and long tail data deposits do not cost money. Special arrangements such as branding and special metadata elements can be made on request.

British Antarctic Survey

BAS

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British Antarctic Survey (BAS) has, for over 60 years, undertaken the majority of Britain's scientific research on and around the Antarctic continent. Atmospheric, biosphere, cryosphere, geosphere, hydrosphere, and Sun-Earth interactions metadata and data are available. Geographic information and collections are highlighted as well. Information and mapping services include a Discovery Metadata System, Data Access System, the Antarctic Digital Database (ADD), Geophysics Data Portal (BAS-GDP), ICEMAR, a fossil database, and the Antarctic Plant Database.

C. Elegans Gene Expression

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!!! <<< Genome data generated by BC Genome Sciences Centre is no longer available through this site as it is regularly deposited into controlled data repositories such as the European Genome Phenome Archive (EGA); ICGC (International Cancer Genome Consortium) and the Genome Data Commons (GDC) <<< !!! Using serial analysis of gene expression (SAGE) and microarrays, we are examining total mRNA populations in all developmental stages, both in whole worms and in specific cells and tissues. In addition, we are building promoter::GFP constructs to monitor gene expression in transgenic worms, focusing on C. elegans genes that have human orthologues. Also available are web-based PCR primer design tools, and access to information about our C. elegans Fosmid library.

California Water CyberInfrastructure

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The repository is no longer available. >>>!!!<<< 2021-01-25: no more access to California Water CyberInfrastructure >>>!!!<<<

Canadian Open Neuroscience Platform Portal

CONP

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The CONP portal is a web interface for the Canadian Open Neuroscience Platform (CONP) to facilitate open science in the neuroscience community. CONP simplifies global researcher access and sharing of datasets and tools. The portal internalizes the cycle of a typical research project: starting with data acquisition, followed by processing using already existing/published tools, and ultimately publication of the obtained results including a link to the original dataset. From more information on CONP, please visit https://conp.ca

ChIP-Seq Transcription Factor Data

ChIP-Seq

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We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors in vivo. We used ChIP-seq to map STAT1 targets in interferon-gamma (IFN-gamma)-stimulated and unstimulated human HeLa S3 cells, and compared the method's performance to ChIP-PCR and to ChIP-chip for four chromosomes.For both Chromatin- immunoprecipation Transcription Factors and Histone modifications. Sequence files and the associated probability files are also provided.

Dartmouth Flood Observatory

DFO

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Space-based measurement and modeling of surface water for research, humanitarian, and water management application. The Observatory detects, maps, and measures major flood events world-wide using satellite remote sensing.

DARTS

ISAS Data Archive and Transmission System

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DARTS primarily archives high-level data products obtained by JAXA's space science missions in astrophysics (X-rays, radio, infrared), solar physics, solar-terrestrial physics, and lunar and planetary science. In addition, we archive related space science data products obtained by other domestic or foreign institutes, and provide data services to facilitate use of these data.

dbSNP

SNV

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The NCBI Short Genetic Variations database, commonly known as dbSNP, catalogs short variations in nucleotide sequences from a wide range of organisms. These variations include single nucleotide variations, short nucleotide insertions and deletions, short tandem repeats and microsatellites. Short Genetic Variations may be common, thus representing true polymorphisms, or they may be rare. Some rare human entries have additional information associated withthem, including disease associations, genotype information and allele origin, as some variations are somatic rather than germline events. ***NCBI will phase out support for non-human organism data in dbSNP and dbVar beginning on September 1, 2017***

dictybase

Dictyostelium discoideum

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dictyBase is an integrated genetic and literature database that contains published Dictyostelium discoideum literature, genes, expressed sequence tags (ESTs), as well as the chromosomal and mitochondrial genome sequences. Direct access to the genome browser, a Blast search tool, the Dictyostelium Stock Center, research tools, colleague databases, and much much more are just a mouse click away. Dictybase is a genome portal for the Amoebozoa. dictyBase is funded by a grant from the National Institute for General Medical Sciences.

domino

domaine peptide interactions

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<<<!!!<<< This repository is no longer available. 2019-02-19 >>>!!!>>>

Energy Data eXchange

EDX

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The Energy Data eXchange (EDX) is an online collection of capabilities and resources that advance research and customize energy-related needs. EDX is developed and maintained by NETL-RIC researchers and technical computing teams to support private collaboration for ongoing research efforts, and tech transfer of finalized DOE NETL research products. EDX supports NETL-affiliated research by: Coordinating historical and current data and information from a wide variety of sources to facilitate access to research that crosscuts multiple NETL projects/programs; Providing external access to technical products and data published by NETL-affiliated research teams; Collaborating with a variety of organizations and institutions in a secure environment through EDX’s ;Collaborative Workspaces

EUDAT

European Data Infrastructure

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The EUDAT project aims to contribute to the production of a Collaborative Data Infrastructure (CDI). The project´s target is to provide a pan-European solution to the challenge of data proliferation in Europe's scientific and research communities. The EUDAT vision is to support a Collaborative Data Infrastructure which will allow researchers to share data within and between communities and enable them to carry out their research effectively. EUDAT aims to provide a solution that will be affordable, trustworthy, robust, persistent and easy to use. EUDAT comprises 26 European partners, including data centres, technology providers, research communities and funding agencies from 13 countries. B2FIND is the EUDAT metadata service allowing users to discover what kind of data is stored through the B2SAFE and B2SHARE services which collect a large number of datasets from various disciplines. EUDAT will also harvest metadata from communities that have stable metadata providers to create a comprehensive joint catalogue to help researchers find interesting data objects and collections.

GlobeData

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GlobeData is a repository for archiving and publishing research data at the Leipzig Research Centre Global Dynamics (ReCentGlobe). It is furthermore open to researchers worldwide in the interdisciplinary fields of global and area studies and will engage in systematic data collection.

HomoMINT

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<<<!!!<<< This repository is no longer available. >>>!!!>>>

IMEx

The International Molecular Exchange Consortium

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The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly deposited interaction data or from publications in peer-reviewed journals, capture full details of an interaction in a “deep” curation model, perform a complete curation of all protein-protein interactions experimentally demonstrated within a publication, make these interaction available in a single search interface on a common website, provide the data in standards compliant download formats, make all IMEx records freely accessible under the Creative Commons Attribution License

InnateDB

A Knowlede Resource for Innate Immunity Interactions & Pathways

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InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource. The database can be mined as a knowledgebase or used with our integrated bioinformatics and visualization tools for the systems level analysis of the innate immune response.

Jason Virtual Van

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Jason is a remote-controlled deep-diving vessel that gives shipboard scientists immediate, real-time access to the sea floor. Instead of making short, expensive dives in a submarine, scientists can stay on deck and guide Jason as deep as 6,500 meters (4 miles) to explore for days on end. Jason is a type of remotely operated vehicle (ROV), a free-swimming vessel connected by a long fiberoptic tether to its research ship. The 10-km (6 mile) tether delivers power and instructions to Jason and fetches data from it.

Kaggle

Your home for data science

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Kaggle is a platform for predictive modelling and analytics competitions in which statisticians and data miners compete to produce the best models for predicting and describing the datasets uploaded by companies and users. This crowdsourcing approach relies on the fact that there are countless strategies that can be applied to any predictive modelling task and it is impossible to know beforehand which technique or analyst will be most effective.

KONECT

Koblenz Network Collection

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This is the KONECT project, a project in the area of network science with the goal to collect network datasets, analyse them, and make available all analyses online. KONECT stands for Koblenz Network Collection, as the project has roots at the University of Koblenz–Landau in Germany. All source code is made available as Free Software, and includes a network analysis toolbox for GNU Octave, a network extraction library, as well as code to generate these web pages, including all statistics and plots. KONECT contains over a hundred network datasets of various types, including directed, undirected, bipartite, weighted, unweighted, signed and rating networks. The networks of KONECT are collected from many diverse areas such as social networks, hyperlink networks, authorship networks, physical networks, interaction networks and communication networks. The KONECT project has developed network analysis tools which are used to compute network statistics, to draw plots and to implement various link prediction algorithms. The result of these analyses are presented on these pages. Whenever we are allowed to do so, we provide a download of the networks.