Repository details

APID

Name of repository
APID
Additional name(s)
  • Agile Protein Interactomes DataServer
  • APID Interactomes
Repository URL
http://apid.dep.usal.es/APID/init.action
Subject(s)
Description
APID Interactomes (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). The interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
Comprehensive compendium of 90.379 distinct proteins and 678.441 singular interactions.
Repository type(s)
  • disciplinary
Mission statement for designated community
http://apid.dep.usal.es/APID/init.action#tabr4
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider

Institutions (4)

Institution
Consejo Superior de Investigaciones Cientificas
Additional name(s)
  • CSIC
Institution
Country
Spain
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Instituto de Salud Carlos III
Additional name(s)
  • ISC
Institution
Country
Spain
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
Universidad de Salamanca
Additional name(s)
  • USAL
Institution
Country
Spain
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
University Institute of Molecular and Cellular Biology of Cancer
Additional name(s)
  • Instituto Biologia Molecular y Celular del Cancer
  • IBMCC
  • formerly: Cancer Research Center, Bioinformatics and Functional Genomics Research Group
Country
Spain
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit

Policies (1)

Policy Name
About APID

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (1)

DataLicense
CC

Data upload (1)

Type of data upload
closed
Persistent identifier system(s)
  • none
Versioning
yes
Data citation guideline
http://apid.dep.usal.es/APID/init.action#tabr4
Enhanced Publication
yes

Remarks

Remarks
APID server was built with a protein and proteome-centered strategy, using UniProt database (https://www.uniprot.org/) as the main guide to identify and handle all the proteins and to map them into the reference proteomes of each species (based on the new proteomes resource that UniProt has recently developed: https://www.uniprot.org/proteomes/).
Entry date
2017-03-30
Last update
2025-08-01
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Cite this re3data.org record:

re3data.org: APID; editing status 2025-08-01; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3407P last accessed: 2025-08-30