Repository details
ChIP-Seq Transcription Factor Data
Name of repository
ChIP-Seq Transcription Factor Data
Additional name(s)
- ChIP-Seq
Repository URL
Subject(s)
Description
We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors in vivo. We used ChIP-seq to map STAT1 targets in interferon-gamma (IFN-gamma)-stimulated and unstimulated human HeLa S3 cells, and compared the method's performance to ChIP-PCR and to ChIP-chip for four chromosomes.For both Chromatin- immunoprecipation Transcription Factors and Histone modifications. Sequence files and the associated probability files are also provided.
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- dataProvider
Institutions (2)
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- BC Cancer Agency, Research Centre
- BCGSC
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (2)
Data upload (1)
Type of data upload
closed
Persistent identifier system(s)
- none
Name of the repository software
- unknown
Data citation guideline
Enhanced Publication
unknown
Quality management
unknown
Remarks
Remarks
Data retrieval by using UCSC Genome Browser
Entry date
2014-02-20
Last update
2021-07-12
Cite this re3data.org record:
re3data.org: ChIP-Seq Transcription Factor Data; editing status 2021-07-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3TW3B last accessed: 2025-04-25- Current projects
- EOSC FAIR-IMPACT
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2025-04-25
