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Found 51 result(s)

InnateDB

A Knowlede Resource for Innate Immunity Interactions & Pathways

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InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource. The database can be mined as a knowledgebase or used with our integrated bioinformatics and visualization tools for the systems level analysis of the innate immune response.

eHOMD

expanded Human Oral Microbiome Database

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The goal of creating the Human Oral Microbiome Database (HOMD) is to provide the scientific community with comprehensive information o­n the approximately 700 prokaryote species that are present in the human oral cavity. Approximately 49% are officially named, 17% unnamed (but cultivated) and 34% are known o­nly as uncultivated phylotypes. The HOMD presents a provisional naming scheme for the currently unnamed species so that strain, clone, and probe data from any laboratory can be directly linked to a stably named reference scheme. The HOMD links sequence data with phenotypic, phylogenetic, clinical, and bibliographic information. Genome sequences for oral bacteria determined as part of this project, the Human Microbiome Project, and other sequencing projects are being added to the HOMD as they become available. Genomes for 315 oral taxa (46% of taxa o­n HOMD) are currently available o­n HOMD. The HOMD site offers easy to use tools for viewing all publically available oral bacterial genomes.

PlasmoDB

Plasmodium Genomics Resource

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PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including malaria.

Immuno Polymorphism Database

IPD

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Established by the HLA Informatics Group of the Anthony Nolan Research Institute, IPD provides a centralized system for studying the immune system's polymorphism in genes. The IPD maintains databases concerning the sequences of human Killer-cell Immunoglobulin-like Receptors (KIR), sequences of the major histocompatibility complex in a number of species, human platelet antigens (HPA), and tumor cell lines. Each subject has related, credible news, current research and publications, and a searchable database for highly specific, research grade genetic information.

Progenetix

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The Progenetix database provides an overview of copy number abnormalities in human cancer from currently 32548 array and chromosomal Comparative Genomic Hybridization (CGH) experiments, as well as Whole Genome or Whole Exome Sequencing (WGS, WES) studies. The cancer profile data in Progenetix was curated from 1031 articles and represents 366 different cancer types, according to the International classification of Diseases in Oncology (ICD-O).

HomoMINT

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<<<!!!<<< This repository is no longer available. >>>!!!>>>

UCLA Social Science Data Archive

SSDA Dataverse

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The Social Science Data Archive is still active and maintained as part of the UCLA Library Data Science Center. SSDA Dataverse is one of the archiving opportunities of SSDA, the others are: Data can be archived by SSDA itself or by ICPSR or by UCLA Library or by California Digital Library. The Social Science Data Archives serves the UCLA campus as an archive of faculty and graduate student survey research. We provide long term storage of data files and documentation. We ensure that the data are useable in the future by migrating files to new operating systems. We follow government standards and archival best practices. The mission of the Social Science Data Archive has been and continues to be to provide a foundation for social science research with faculty support throughout an entire research project involving original data collection or the reuse of publicly available studies. Data Archive staff and researchers work as partners throughout all stages of the research process, beginning when a hypothesis or area of study is being developed, during grant and funding activities, while data collection and/or analysis is ongoing, and finally in long term preservation of research results. Our role is to provide a collaborative environment where the focus is on understanding the nature and scope of research approach and management of research output throughout the entire life cycle of the project. Instructional support, especially support that links research with instruction is also a mainstay of operations.

UNB Libraries Dataverse Research Data Repository

University of New Brunswick Libraries Dataverse Research Data Repository

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UNB Dataverse is repository for research data collected by researchers and organizations primarily affiliated with the University of New Brunswick. The repository allows researchers to deposit, share, analyze, cite, and explore data. Dataverse is an open source application developed by the Institute for Quantitative Social Science (IQSS) at Harvard University.

The Global Proteome Machine

GPM

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The Global Proteome Machine (GPM) is a protein identification database. This data repository allows users to post and compare results. GPM's data is provided by contributors like The Informatics Factory, University of Michigan, and Pacific Northwestern National Laboratories. The GPM searchable databases are: GPMDB, pSYT, SNAP, MRM, PEPTIDE and HOT.

DisGeNET

A knowledge base for disease genomics

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DisGeNET is a discovery platform containing one of the largest publicly available collections of genes and variants associated to human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models and the scientific literature. DisGeNET data are homogeneously annotated with controlled vocabularies and community-driven ontologies. Additionally, several original metrics are provided to assist the prioritization of genotype–phenotype relationships.

Riga Stradins University dataverse

Rīga Stradiņš University Institutional Repository Dataverse

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Rīga Stradiņš University (RSU) Dataverse is created for RSU researchers to deposit their data there after the end of research projects or other research activities, especially in cases when there are no trusted field specific repositories.

Brunel figshare

Brunel research data repository & registry

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Brunel Figshare (brunel.figshare.com) is a Data Repository where Brunel’s researchers can deposit their digital Research Data, to make it available in a citable, shareable and discoverable manner.

Nightingale Open Science

NGSCI

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Nightingale helps researchers safely access, use, and share health data, particularly high-dimensional data such as medical imaging and waveforms linked to ground truth outcomes.

UniSA Research Data Access Portal

University of South Australia Research Data Access Portal

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The UniSA Data Access Portal showcases a range of Open Access research collections and datasets developed or collected by the University of South Australia. The UniSA Data Access Portal also highlights research projects and publications related to the available collections and datasets, and facilitates a variety of searches by researcher, organisation, discipline and keyword. Research collections and datasets available in Open Access can be freely downloaded and used to support your research in line with the terms of the licence under which they are made available.

SimTK

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SimTK is a free project-hosting platform for the biomedical computation community that enables researchers to easily share their software, data, and models and provides the infrastructure so they can support and grow a community around their projects. It has over 126.656 members, hosts 1.648 projects from researchers around the world, and has had more than 2.095.783 files downloaded from it. Individuals have created SimTK projects to meet publisher and funding agencies’ software and data sharing requirements, run scientific challenges, create a collection of their community’s resources, and much more.

QTL Archive

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This site provides access to raw data from various QTL (quantitative trait loci) studies using rodent inbred line crosses. Data are available in the .csv format used by R/qtl and pseudomarker programs. In some cases analysis scripts and/or results are posted to accompany the data.

NCI Imaging Data Commons

NCI IDC

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NCI Imaging Data Commons (IDC) is a cloud-based repository of publicly available cancer imaging data co-located with the analysis and exploration tools and resources. IDC is a node within the broader NCI Cancer Research Data Commons (CRDC) infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data.

UCL Research Data Repository

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The UCL Research Data Repository is the institutional data repository of University College London. Based on Figshare, it accepts data deposits from UCL staff and doctoral students from all disciplines. Depositors are encouraged to use CC0 licences to make their data available to the widest possible range of users and the widest range of uses.

Scotland's Rural College Research Data Repository

SRUC research data

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SRUC is currently on a transformational journey as we move towards becoming a unique, market-led and mission diverse 21st Century rural university, driving the future needs of a dynamic, innovative and competitive rural sector in Scotland, and working with our collaborators and partners worldwide to solve the biggest global agrifood challenges. Our researchers already carry out strategic and applied research on global and local food security issues, and actively support the translation of research results into practice. Our research ethos is strongly collaborative, and we have a long history of industrial, NGO and academic partnerships locally and internationally. As well as having longstanding disciplinary strengths in several key areas, we actively promote interdisciplinary research, especially linking natural and social sciences. We have a particular interest in research that helps inform policy, with Scottish and UK Government rural affairs and environment departments and the EU as key research clients.

Loughborough Research Repository

Loughborough University Research Repository

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Loughborough Research Repository is the institutional repository of Loughborough University powered by figshare.

XNAT CENTRAL

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XNAT CENTRAL is a publicly accessible datasharing portal at Washinton University Medical School using XNAT software. XNAT provides neuroimaging data through a web interface and a customizable open source platform. XNAT facilitates data uploads and downloads for data sharing, processing and organization. NOTICE: Central XNAT will be decommissioned on October 15, 2023. New project creation is no longer permitted.

NCBI GSS

dbGSS

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<<<!!!<<< GSS sequences are now being merged into the NCBI Nucleotide database >>>!!!>>>

Leiden Open Variation Database

LOVD

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LOVD portal provides LOVD software and access to a list of worldwide LOVD applications through Locus Specific Database list and List of Public LOVD installations. The LOVD installations that have indicated to be included in the global LOVD listing are included in the overall LOVD querying service, which is based on an API.

Ensembl

e!

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The Ensembl project produces genome databases for vertebrates and other eukaryotic species. Ensembl is a joint project between the European Bioinformatics Institute (EBI) and the Wellcome Trust Sanger Institute (WTSI) to develop a software system that produces and maintains automatic annotation on selected genomes.The Ensembl project was started in 1999, some years before the draft human genome was completed. Even at that early stage it was clear that manual annotation of 3 billion base pairs of sequence would not be able to offer researchers timely access to the latest data. The goal of Ensembl was therefore to automatically annotate the genome, integrate this annotation with other available biological data and make all this publicly available via the web. Since the website's launch in July 2000, many more genomes have been added to Ensembl and the range of available data has also expanded to include comparative genomics, variation and regulatory data. Ensembl is a joint project between European Bioinformatics Institute (EBI), an outstation of the European Molecular Biology Laboratory (EMBL), and the Wellcome Trust Sanger Institute (WTSI). Both institutes are located on the Wellcome Trust Genome Campus in Hinxton, south of the city of Cambridge, United Kingdom.

Repositorio de datos de investigación de la Universidad del Rosario

Research data repository of Universidad del Rosario

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The Universidad del Rosario Research data repository is an institutional iniciative launched in 2019 to preserve, provide access and promote the use of data resulting from Universidad del Rosario research projects. The Repository aims to consolidate an online, collaborative working space and data-sharing platform to support Universidad del Rosario researchers and their collaborators, and to ensure that research data is available to the community, in order to support further research and contribute to the democratization of knowledge. The Research data repository is the heart of an institutional strategy that seeks to ensure the generation of Findable, Accessible, Interoperable and Reusable (FAIR) data, with the aim of increasing its impact and visibility. This strategy follows the international philosophy of making research data “as open as possible and as closed as necessary”, in order to foster the expansion, valuation, acceleration and reusability of scientific research, but at the same time, safeguard the privacy of the subjects. The platform storage, preserves and facilitates the management of research data from all disciplines, generated by the researchers of all the schools and faculties of the University, that work together to ensure research with the highest standards of quality and scientific integrity, encouraging innovation for the benefit of society.