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Found 769 result(s)

ExAC Browser

Exome Aggregation Consortium Browser

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<<<!!!<<< The ExAC browser is no longer available ExAC data is available in the gnomAD browser https://gnomad.broadinstitute.org/ or for download https://gnomad.broadinstitute.org/downloads#exac-variants. >>>!!!>>>

GigaDB

GigaScience Database

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GigaDB primarily serves as a repository to host data and tools associated with articles published by GigaScience Press; GigaScience and GigaByte (both are online, open-access journals). GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support a unit-of-work (article or study). GigaDB allows the integration of manuscript publication with supporting data and tools.

Emage

e-Mouse Atlas of Gene Expression

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EMAGE (e-Mouse Atlas of Gene Expression) is an online biological database of gene expression data in the developing mouse (Mus musculus) embryo. The data held in EMAGE is spatially annotated to a framework of 3D mouse embryo models produced by EMAP (e-Mouse Atlas Project). These spatial annotations allow users to query EMAGE by spatial pattern as well as by gene name, anatomy term or Gene Ontology (GO) term. EMAGE is a freely available web-based resource funded by the Medical Research Council (UK) and based at the MRC Human Genetics Unit in the Institute of Genetics and Molecular Medicine, Edinburgh, UK.

DASSH - The Archive for Marine Species and Habitats Data

Data Archive for Seabed Species and Habitats

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Accredited through the MEDIN partnership, and core-funded by the Department for the Environment, Food and Rural Affairs (Defra) and the Scottish Government, DASSH provides tools and services for the long-term curation, management and publication of marine species and habitats data, within the UK and internationally. Working closely with partners and data providers we are committed to the FAIR Data Principles, to make marine biodiversity data Findable, Accessible, Interoperable and Reusable. DASSH is a flagship initiative of the Marine Biological Association (MBA), and builds on the MBA's historic role in marine science. Through partnerships with other UK and European data centres DASSH contributes to data portals including the NBN Atlas, EMODnet, EurOBIS and GBIF. On an international scale DASSH is also the UK node of the Ocean Biogeographic Information System (OBIS), and an Associated Data Unit of the International Oceanographic Data and Information Exchange (IODE), giving the Data Archive Centre global recognition.

Agricultural and Environmental Data Archive

AEDA

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The Agricultural and Environmental Data Archive (AEDA) is the direct result of a project managed by the Freshwater Biological Association in partnership with the Centre for e-Research at King's College London, and funded by the Department for the Environment, Food & Rural Affairs (Defra). This project ran from January 2011 until December 2014 and was called the DTC Archive Project, because it was initially related to the Demonstration Test Catchments Platform developed by Defra. The archive was also designed to hold data from the GHG R&D Platform (www.ghgplatform.org.uk). After the DTC Archive Project was completed the finished archive was renamed as AEDA to reflect it's broader remit to archive data from any and all agricultural and environmental research activities.

PeptideAtlas

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The PeptideAtlas validates expressed proteins to provide eukaryotic genome data. Peptide Atlas provides data to advance biological discoveries in humans. The PeptideAtlas accepts proteomic data from high-throughput processes and encourages data submission.

National Weather Service, National Centers for Environmental Prediction

National Centers for Environmental Prediction

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NCEP delivers national and global weather, water, climate and space weather guidance, forecasts, warnings and analyses to its Partners and External User Communities. The National Centers for Environmental Prediction (NCEP), an arm of the NOAA's National Weather Service (NWS), is comprised of nine distinct Centers, and the Office of the Director, which provide a wide variety of national and international weather guidance products to National Weather Service field offices, government agencies, emergency managers, private sector meteorologists, and meteorological organizations and societies throughout the world. NCEP is a critical national resource in national and global weather prediction. NCEP is the starting point for nearly all weather forecasts in the United States. The Centers are: Aviation Weather Center (AWC), Climate Prediction Center (CPC), Environmental Modeling Center (EMC), NCEP Central Operations (NCO), National Hurricane Center (NHC), Ocean Prediction Center (OPC), Storm Prediction Center (SPC), Space Weather Prediction Center (SWPC), Weather Prediction Center (WPC)

Wissenschaftliche Sammlungen

Wissenschaftliche Sammlungen in Deutschland und ihre Digitalisierung

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The portal "Wissenschaftliche Sammlungen" is a project of the Coordination Office for Academic University Collections in Germany in cooperation with the Academic University and University Collections. Together we create a platform that makes information on scientific collections, activities and actors as well as metadata and digitised objects visible, searchable and scientifically usable via a web portal. The data will be freely and openly accessible via technical interfaces in standard formats and fed into national reference systems such as the German Digital Library.

Health Canada Drug Product Database

DPD

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The Health Canada Drug Product Database contains product specific information on drugs approved for use in Canada. The database is managed by Health Canada and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. It contains approximately 15,000 products which companies have notified Health Canada as being marketed.

National Biodiversity Information System of Mexico

Sistema Nacional de Información sobre Biodiversidad de México

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The National Biodiversity Information System (SNIB) of Mexico by the National Commission for the Knowledge and Use of Biodiversity (CONABIO). The SNIB is of strategic importance in a megadiversity country like Mexico, making it clear to CONABIO from the beginning that the SNIB should rely on the work of the multiplicity of institutions and national and foreign experts that for years have been dedicated to the study of biodiversity of Mexico. The creation of this system was expressed as a mandate for CONABIO in the General Law of Ecological Balance and Environmental Protection (LGEEPA Art. 80 fraction V). The participation of specialists in the generation of data and information for the SNIB is one of the various ways in which they collaborate with this system, since having an information system that allows the country to make informed decisions regarding its biodiversity requires that it be made up of data and information supported by a broad network of experts.

Global Pesticides Release Data

la Base de données mondiale sur les rejets de pesticides

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<<<!!!<<< The repository is no longer available. 2019-02-05: no more access to Global Pesticides Release Data. >>>!!!>>>

VectorBase

Bioinformatics Resource for Invertebrate Vectors of Human Pathogens

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VectorBase provides data on arthropod vectors of human pathogens. Sequence data, gene expression data, images, population data, and insecticide resistance data for arthropod vectors are available for download. VectorBase also offers genome browser, gene expression and microarray repository, and BLAST searches for all VectorBase genomes. VectorBase Genomes include Aedes aegypti, Anopheles gambiae, Culex quinquefasciatus, Ixodes scapularis, Pediculus humanus, Rhodnius prolixus. VectorBase is one the Bioinformatics Resource Centers (BRC) projects which is funded by National Institute of Allergy and Infectious Diseases (NAID).

CIRAD Dataverse

Données de recherche du CIRAD

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The range of CIRAD's research has given rise to numerous datasets and databases associating various types of data: primary (collected), secondary (analysed, aggregated, used for scientific articles, etc), qualitative and quantitative. These "collections" of research data are used for comparisons, to study processes and analyse change. They include: genetics and genomics data, data generated by trials and measurements (using laboratory instruments), data generated by modelling (interpolations, predictive models), long-term observation data (remote sensing, observatories, etc), data from surveys, cohorts, interviews with players.

OceanRep GEOMAR Repository

GEOMAR Helmholtz Centre for Ocean Research Kiel

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GEOMAR Helmholtz Centre for Ocean Research Kiel is one of the leading marine science institutions in Europe. GEOMAR investigates the chemical, physical, biological, and geological processes in the oceans, as well as their interactions with the seafloor and the atmosphere. OceanRep is an open access digital collection containing the research output of GEOMAR staff and students. Included are journal articles, conference papers, book chapters, theses and more, - with fulltext, if available. Research data are linked to the publications entries.

Codex

A comprehensive and functional compendium of Next Generation Sequencing experiments.

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<<<!!!<<<This repository is no longer available>>>!!!>>>

Biomedical Informatics Research Network

BIRN

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>>>!!!<<< As stated 2017-05-16 The BIRN project was finished a few years ago. The web portal is no longer live.>>>!!!<<< BIRN is a national initiative to advance biomedical research through data sharing and online collaboration. It supports multi-site, and/or multi-institutional, teams by enabling researchers to share significant quantities of data across geographic distance and/or incompatible computing systems. BIRN offers a library of data-sharing software tools specific to biomedical research, best practice references, expert advice and other resources.

Comparative RNA Web

CRW

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The Comparative RNA Web (CRW) Site disseminates information about RNA structure and evolution that has been determined using comparative sequence analysis. We present both raw (sequences, structure models, metadata) and processed (analyses, evolution, accuracy) data, organized into four main sections.

GeneLab

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GeneLab is an interactive, open-access resource where scientists can upload, download, store, search, share, transfer, and analyze omics data from spaceflight and corresponding analogue experiments. Users can explore GeneLab datasets in the Data Repository, analyze data using the Analysis Platform, and create collaborative projects using the Collaborative Workspace. GeneLab promises to facilitate and improve information sharing, foster innovation, and increase the pace of scientific discovery from extremely rare and valuable space biology experiments. Discoveries made using GeneLab have begun and will continue to deepen our understanding of biology, advance the field of genomics, and help to discover cures for diseases, create better diagnostic tools, and ultimately allow astronauts to better withstand the rigors of long-duration spaceflight. GeneLab helps scientists understand how the fundamental building blocks of life itself – DNA, RNA, proteins, and metabolites – change from exposure to microgravity, radiation, and other aspects of the space environment. GeneLab does so by providing fully coordinated epigenomics, genomics, transcriptomics, proteomics, and metabolomics data alongside essential metadata describing each spaceflight and space-relevant experiment. By carefully curating and implementing best practices for data standards, users can combine individual GeneLab datasets to gain new, comprehensive insights about the effects of spaceflight on biology. In this way, GeneLab extends the scientific knowledge gained from each biological experiment conducted in space, allowing scientists from around the world to make novel discoveries and develop new hypotheses from these priceless data.

CITK

Cognitive Interaction Toolkit

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<<<!!!<<< This repository is no longer available. >>>!!!>>>

NCBI Trace Archive

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<<<!!!<<< This repository is no longer available. (Trace Archive is scheduled to retire on June 17, 2022) >>>!!!>>>

SiB Colombia Portal de Datos

GBIF Colombia

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The Colombian Biodiversity Information Facility (SiB Colombia) is a national initiative established in early 2000 and coordinated by Instituto Humboldt to facilitate free and open access to biodiversity data. It comprises a network of more than 100 organizations (including universities, biological collections, research institutes, environmental authorities and NGOs among others) that work together to ensure that biodiversity data is available to support further research, education, policy making and incentive measures for the conservation and sustainable use of biodiversity. SiB Colombia’s mission is to facilitate the management of biodiversity data by bringing together users, publishers and data producers to support research, education and decision making related to knowledge, conservation and sustainable use of biodiversity and ecosystem services. SiB Colombia aims to consolidate the collaborative platform that facilitates the generation, use and democratization of knowledge on the biodiversity of Colombia. Thus, SiB Colombia contributes to a vision of a society that knows and values the biodiversity in which it is immersed, and uses such knowledge for its development.

Yeast Resource Center

Yeast Resource Center Public Data Repository

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The Yeast Resource Center provides access to data about mass spectrometry, yeast two-hybrid arrays, deconvolution florescence microscopy, protein structure prediction and computational biology. These services are provided to further the goal of a complete understanding of the chemical interactions required for the maintenance and faithful reproduction of a living cell. The observation that the fundamental biological processes of yeast are conserved among all eukaryotes ensures that this knowledge will shape and advance our understanding of living systems.

FaceBase

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FaceBase is a collaborative NIDCR-funded project that houses comprehensive data in support of advancing research into craniofacial development and malformation. It serves as a community resource by curating large datasets of a variety of types from the craniofacial research community and sharing them via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this project is to facilitate cooperation and collaboration between the central coordinating center (ie, the Hub) and the craniofacial research community.

TwinsUK

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The TwinsUK resource is the biggest UK adult twin registry of 14.000 twins used to study the genetic and environmental aetiology of age related complex traits and diseases.

PRoteomics IDEntifications Database

PRIDE

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The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE encourages and welcomes direct user submissions of mass spectrometry data to be published in peer-reviewed publications.