Filter
Subjects
Content Types
Countries
AID systems
API
Certificates
Data access
Data access restrictions
Database access
Database licenses
Data licenses
Data upload
Data upload restrictions
Enhanced publication
Institution responsibility type
Institution type
Keywords
Metadata standards
PID systems
Provider types
Quality management
Repository languages
Software
Syndications
Repository types
Versioning
-
*at the end of a keyword allows wildcard searches -
"quotes can be used for searching phrases -
+represents an AND search (default) -
|represents an OR search -
-represents a NOT operation -
(and)implies priority -
~Nafter a word specifies the desired edit distance (fuzziness) -
~Nafter a phrase specifies the desired slop amount
Found 51 result(s)
Subject(s)
Content type(s)
Country
The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.
Subject(s)
Content type(s)
Country
OBIS strives to document the ocean's diversity, distribution and abundance of life. Created by the Census of Marine Life, OBIS is now part of the Intergovernmental Oceanographic Commission (IOC) of UNESCO, under its International Oceanographic Data and Information Exchange (IODE) programme
Subject(s)
Content type(s)
Country
OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes that is freely available and updated daily. OMIM is authored and edited at the McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, under the direction of Dr. Ada Hamosh. Its official home is omim.org.
Subject(s)
Content type(s)
Country
<<<!!!<<< CRAWDAD has moved to IEEE-Dataport https://www.re3data.org/repository/r3d100012569
The datasets in the Community Resource for Archiving Wireless Data at Dartmouth (CRAWDAD) repository are now hosted as the CRAWDAD Collection on IEEE Dataport. After nearly two decades as a stand-alone archive at crawdad.org, the migration of the collection to IEEE DataPort provides permanence and new visibility. >>>!!!>>>
Content type(s)
Country
Welcome to the largest bibliographic database dedicated to Economics and available freely on the Internet. This site is part of a large volunteer effort to enhance the free dissemination of research in Economics, RePEc, which includes bibliographic metadata from over 1,800 participating archives, including all the major publishers and research outlets. IDEAS is just one of several services that use RePEc data.
Authors are invited to register with RePEc to create an online profile. Then, anyone finding some of your research here can find your latest contact details and a listing of your other research. You will also receive a monthly mailing about the popularity of your works, your ranking and newly found citations.
Besides that IDEAS provides software and public accessible data from Federal Reserve Bank.
Subject(s)
Content type(s)
RAVE (RAdial Velocity Experiment) is a multi-fiber spectroscopic astronomical survey of stars in the Milky Way using the 1.2-m UK Schmidt Telescope of the Anglo-Australian Observatory (AAO). The RAVE collaboration consists of researchers from over 20 institutions around the world and is coordinated by the Leibniz-Institut für Astrophysik Potsdam. As a southern hemisphere survey covering 20,000 square degrees of the sky, RAVE's primary aim is to derive the radial velocity of stars from the observed spectra. Additional information is also derived such as effective temperature, surface gravity, metallicity, photometric parallax and elemental abundance data for the stars. The survey represents a giant leap forward in our understanding of our own Milky Way galaxy; with RAVE's vast stellar kinematic database the structure, formation and evolution of our Galaxy can be studied.
Subject(s)
Content type(s)
Ensembl Metazoa is a genome-centric portal for metazoan species of scientific interest.
Subject(s)
Content type(s)
Country
The Mikulski Archive for Space Telescopes (MAST) is a NASA funded project to support and provide to the astronomical community a variety of astronomical data archives, with the primary focus on scientifically related data sets in the optical, ultraviolet, and near-infrared parts of the spectrum. MAST is located at the Space Telescope Science Institute (STScI).
Subject(s)
Content type(s)
Country
IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.
Content type(s)
Country
ClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. ClinVar thus facilitates access to and communication about the relationships asserted between human variation and observed health status, and the history of that interpretation. ClinVar processes submissions reporting variants found in patient samples, assertions made regarding their clinical significance, information about the submitter, and other supporting data. The alleles described in submissions are mapped to reference sequences, and reported according to the HGVS standard. ClinVar then presents the data for interactive users as well as those wishing to use ClinVar in daily workflows and other local applications. ClinVar works in collaboration with interested organizations to meet the needs of the medical genetics community as efficiently and effectively as possible
Subject(s)
Content type(s)
Country
The OpenMadrigal project seeks to develop and support an on-line database for geospace data. The project has been led by MIT Haystack Observatory since 1980, but now has active support from Jicamarca Observatory and other community members. Madrigal is a robust, World Wide Web based system capable of managing and serving archival and real-time data, in a variety of formats, from a wide range of ground-based instruments. Madrigal is installed at a number of sites around the world. Data at each Madrigal site is locally controlled and can be updated at any time, but shared metadata between Madrigal sites allow searching of all Madrigal sites at once from any Madrigal site. Data is local; metadata is shared.
Subject(s)
Content type(s)
EnsemblPlants is a genome-centric portal for plant species. Ensembl Plants is developed in coordination with other plant genomics and bioinformatics groups via the EBI's role in the transPLANT consortium.
Subject(s)
Content type(s)
Country
The Research Data Archive (RDA) at NCAR contains a large and diverse collection of meteorological and oceanographic observations, operational and reanalysis model outputs, and remote sensing datasets to support atmospheric and geosciences research.
Subject(s)
Content type(s)
Country
The Bacterial and Viral Bioinformatics Resource Center (BV-BRC) is an information system designed to support research on bacterial and viral infectious diseases. BV-BRC combines two long-running BRCs: PATRIC, the bacterial system, and IRD/ViPR, the viral systems.
Subject(s)
Content type(s)
Country
The Keck Observatory Archive (KOA)is a collaboration between the NASA Exoplanet Science Institute (NExScI) and the W. M. Keck Observatory (WMKO). This collaboration is founded by the NASA. KOA has been archiving data from the High Resolution Echelle Spectrograph (HIRES) since August 2004 and data acquired with the Near InfraRed echelle SPECtrograph (NIRSPEC) since May 2010. The archived data extend back to 1994 for HIRES and 1999 for NIRSPEC. The W. M. Keck Observatory Archive (KOA) ingests and curates data from the following instruments: DEIMOS, ESI, HIRES, KI, LRIS, MOSFIRE, NIRC2, and NIRSPEC.
Country
The Illinois Data Bank is a public access data repository that collects, disseminates, and provides persistent and reliable access to the research data of faculty, staff, and students at the University of Illinois at Urbana-Champaign. Faculty, staff, graduate students can deposit their research data directly into the Illinois Data Bank and receive a DOI for citation purposes.
Subject(s)
Content type(s)
Country
Kaggle is a platform for predictive modelling and analytics competitions in which statisticians and data miners compete to produce the best models for predicting and describing the datasets uploaded by companies and users. This crowdsourcing approach relies on the fact that there are countless strategies that can be applied to any predictive modelling task and it is impossible to know beforehand which technique or analyst will be most effective.
Content type(s)
Country
This site is dedicated to making high value health data more accessible to entrepreneurs, researchers, and policy makers in the hopes of better health outcomes for all. In a recent article, Todd Park, United States Chief Technology Officer, captured the essence of what the Health Data Initiative is all about and why our efforts here are so important.
Content type(s)
Country
VertNet is a NSF-funded collaborative project that makes biodiversity data free and available on the web. VertNet is a tool designed to help people discover, capture, and publish biodiversity data. It is also the core of a collaboration between hundreds of biocollections that contribute biodiversity data and work together to improve it. VertNet is an engine for training current and future professionals to use and build upon best practices in data quality, curation, research, and data publishing. Yet, VertNet is still the aggregate of all of the information that it mobilizes. To us, VertNet is all of these things and more.
Content type(s)
Country
The NCBI Short Genetic Variations database, commonly known as dbSNP, catalogs short variations in nucleotide sequences from a wide range of organisms. These variations include single nucleotide variations, short nucleotide insertions and deletions, short tandem repeats and microsatellites. Short Genetic Variations may be common, thus representing true polymorphisms, or they may be rare. Some rare human entries have additional information associated withthem, including disease associations, genotype information and allele origin, as some variations are somatic rather than germline events.
***NCBI will phase out support for non-human organism data in dbSNP and dbVar beginning on September 1, 2017***
Subject(s)
Content type(s)
Country
The Harvard Dataverse is open to all scientific data from all disciplines worldwide. It includes the world's largest collection of social science research data. It is hosting data for projects, archives, researchers, journals, organizations, and institutions.
Subject(s)
Content type(s)
Country
OpenWorm aims to build the first comprehensive computational model of the Caenorhabditis elegans (C. elegans), a microscopic roundworm. With only a thousand cells, it solves basic problems such as feeding, mate-finding and predator avoidance. Despite being extremely well studied in biology, this organism still eludes a deep, principled understanding of its biology.
We are using a bottom-up approach, aimed at observing the worm behaviour emerge from a simulation of data derived from scientific experiments carried out over the past decade. To do so we are incorporating the data available in the scientific community into software models. We are engineering Geppetto and Sibernetic, open-source simulation platforms, to be able to run these different models in concert. We are also forging new collaborations with universities and research institutes to collect data that fill in the gaps
All the code we produce in the OpenWorm project is Open Source and available on GitHub.
Content type(s)
Country
TAED is a database of phylogenetically indexed gene families. It contains multiple sequence alignments from MAFFT1, maximum likelihood phylogenetic trees from PhyML2, bootstrap values for each node, dN/dS ratios for each lineage from the free ratios model in PAML3, and labels for each node of speciation or duplication from gene tree/species tree reconciliation using SoftParsMap4. The phylogenetic indexing enables simultaneous viewing of lineages with high dN/dS that occurred along the same species tree branches. Resources from the Protein Data Bank (PDB) and the Kyoto Encyclopedia of Genes and Genomes (KEGG)5, have been incorporated into the TAED analysis to detect substitutions along each branch within the phylogenetic tree and to assess selection within pathways.
Subject(s)
- Plant Sciences
- Biology
- Plant Genetics
- Plant Breeding
- Basic Forest Research
- Plant Systematics and Evolution
- Life Sciences
- Agriculture, Forestry, Horticulture and Veterinary Medicine
- Agriculture, Forestry, Horticulture and Veterinary Medicine
- Bioinformatics and Theoretical Biology
- Basic Biological and Medical Research
Content type(s)
Country
TreeGenes is a genomic, phenotypic, and environmental data resource for forest tree species. The TreeGenes database and Dendrome project provide custom informatics tools to manage the flood of information.The database contains several curated modules that support the storage of data and provide the foundation for web-based searches and visualization tools. GMOD GUI tools such as CMAP for genetic maps and GBrowse for genome and transcriptome assemblies are implemented here. A sample tracking system, known as the Forest Tree Genetic Stock Center, sits at the forefront of most large-scale projects. Barcode identifiers assigned to the trees during sample collection are maintained in the database to identify an individual through DNA extraction, resequencing, genotyping and phenotyping. DiversiTree, a user-friendly desktop-style interface, queries the TreeGenes database and is designed for bulk retrieval of resequencing data. CartograTree combines geo-referenced individuals with relevant ecological and trait databases in a user-friendly map-based interface. ---- The Conifer Genome Network (CGN) is a virtual nexus for researchers working in conifer genomics. The CGN web site is maintained by the Dendrome Project at the University of California, Davis.
Subject(s)
Content type(s)
Country
NKN is now Research Computing and Data Services (RCDS)!
We provide data management support for UI researchers and their regional, national, and international collaborators. This support keeps researchers at the cutting-edge of science and increases our institution's competitiveness for external research grants. Quality data and metadata developed in research projects and curated by RCDS (formerly NKN) is a valuable, long-term asset upon which to develop and build new research and science.
- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-06-22
