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Found 172 result(s)
STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources: - Genomic Context - High-throughput Experiments - (Conserved) Coexpression - Previous Knowledge STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.
The PDS archives and distributes scientific data from NASA planetary missions, astronomical observations, and laboratory measurements. The PDS is sponsored by NASA's Science Mission Directorate. Its purpose is to ensure the long-term usability of NASA data and to stimulate advanced research
FungiDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB was first released in early 2011 as a collaborative project between EuPathDB and the group of Jason Stajich (University of California, Riverside). At the end of 2015, FungiDB was integrated into the EuPathDB bioinformatic resource center. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining.
GloPAD is a multimedia, multilingual, web-accessible database containing digital images, texts, video clips, sound recordings, and complex media objects (such as 3-D images) related to the performing arts from around the world. GloPAD (Global Performing Arts Database) records include authoritative, detailed, multilingual descriptions of digital images, texts, video clips, sound recordings, and complex media objects related to the performing arts around the world, plus information about related pieces, productions, performers, and creators. GloPAC is an international organization of institutions and individuals committed to using innovative digital technologies to create easily accessible, multimedia, and multilingual information resources for the study and preservation of the performing arts.
The VDC is a public, web-based search engine for accessing worldwide earthquake strong ground motion data. While the primary focus of the VDC is on data of engineering interest, it is also an interactive resource for scientific research and government and emergency response professionals.
OrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences. It provides not only groups shared by two or more species/genomes, but also groups representing species-specific gene expansion families. So it serves as an important utility for automated eukaryotic genome annotation. OrthoMCL starts with reciprocal best hits within each genome as potential in-paralog/recent paralog pairs and reciprocal best hits across any two genomes as potential ortholog pairs. Related proteins are interlinked in a similarity graph. Then MCL (Markov Clustering algorithm,Van Dongen 2000; www.micans.org/mcl) is invoked to split mega-clusters. This process is analogous to the manual review in COG construction. MCL clustering is based on weights between each pair of proteins, so to correct for differences in evolutionary distance the weights are normalized before running MCL.
TES is the first satellite instrument to provide simultaneous concentrations of carbon monoxide, ozone, water vapor and methane throughout Earth’s lower atmosphere. This lower atmosphere (the troposphere) is situated between the surface and the height at which aircraft fly, and is an important part of the atmosphere that we often impact with our activities.
VAMDC aims to be an interoperable e-infrastructure that provides the international research community with access to a broad range of atomic and molecular (A&M) data compiled within a set of A&M databases accessible through the provision of this portal and of user software. Furthermore VAMDC aims to provide A&M data providers and compilers with a large dissemination platform for their work. VAMDC infrastructure was established to provide a service to a wide international research community and has been developed in conjunction with consultations and advice from the A&M user community.
The Duke Research Data Repository is a service of the Duke University Libraries that provides curation, access, and preservation of research data produced by the Duke community. Duke's RDR is a discipline agnostic institutional data repository that is intended to preserve and make public data related to the teaching and research mission of Duke University including data linked to a publication, research project, and/or class, as well as supplementary software code and documentation used to provide context for the data.
The Seamount Catalog is a digital archive for bathymetric seamount maps from all the oceans that can be viewed and downloaded in various formats. This catalog contains morphological data, sample information, related grid and multibeam data files, as well as user-contributed files that all can be downloaded.
Country
The Norwegian Marine Data Centre (NMD) at the Institute of Marine Research was established as a national data centre dedicated to the professional processing and long-term storage of marine environmental and fisheries data and production of data products. The Institute of Marine Research continuously collects large amounts of data from all Norwegian seas. Data are collected using vessels, observation buoys, manual measurements, gliders – amongst others. NMD maintains the largest collection of marine environmental and fisheries data in Norway.
The Deep Blue Data repository is a means for University of Michigan researchers to make their research data openly accessible to anyone in the world, provided they meet collections criteria. Submitted data sets undergo a curation review by librarians to support discovery, understanding, and reuse of the data.
The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database accepts submissions via an online tool, or in a simple tab-delimited format. It also enables authors to submit supplementary information and link to it from the publication.
The CCHDO's primary mission is to deliver the highest possible quality global CTD and hydrographic data to users. These data are a product of decades of observations related to the physical characteristics of ocean waters carried out during GO-SHIP, WOCE, CLIVAR and numerous other oceanographic research programs. Whenever possible we provide these data in three easy-to-use formats: WHP-Exchange (which we recommend for data submissions to the CCHDO), WOCE, and netCDF. The CCHDO also manages public and non-public CTD data to be used for the global Argo and OceanSITES programs.
The Archaeological Map of the Czech Republic (AMCR) is an information system for the collection, management and presentation of data on archaeological research in the territory of the Czech Republic and for the knowledge of the past of Bohemia, Moravia and Silesia. The data included describe tens of thousands of archaeological investigations and their concrete findings. They include information about research leaders, when the research was conducted, its location, what findings and from what period the research found. A special type of record is data on archaeological sites, detected by both surface and remote sensing. Most records are linked to digital document storage and bibliographic catalogue.
WFCC Global Catalogue of Microorganisms (GCM) is expected to be a robust, reliable and user-friendly system to help culture collections to manage, disseminate and share the information related to their holdings. It also provides a uniform interface for the scientific and industrial communities to access the comprehensive microbial resource information.
The International Union of Basic and Clinical Pharmacology (IUPHAR) / British Pharmacological Society (BPS) Guide to PHARMACOLOGY is an expert-curated resource of ligand-activity-target relationships, the majority of which come from high-quality pharmacological and medicinal chemistry literature. It is intended as a “one-stop shop” portal to pharmacological information and its main aim is to provide a searchable database with quantitative information on drug targets and the prescription medicines and experimental drugs that act on them. In future versions we plan to add resources for education and training in pharmacological principles and techniques along with research guidelines and overviews of key topics. We hope that the IUPHAR/BPS Guide to PHARMACOLOGY (abbreviated as GtoPdb) will be useful for researchers and students in pharmacology and drug discovery and provide the general public with accurate information on the basic science underlying drug action.
Country
DABAR (Digital Academic Archives and Repositories) is the key component of the Croatian e-infrastructure’s data layer. It provides technological solutions that facilitate maintenance of higher education and science institutions' digital assets, i.e., various digital objects produced by the institutions and their employees.
IsoArcH is an open access isotope web-database for bioarchaeological samples from prehistoric and historical periods all over the world. With 40,000+ isotope related data obtained on 13,000+ specimens (i.e., humans, animals, plants and organic residues) coming from 500+ archaeological sites, IsoArcH is now one of the world's largest repositories for isotopic data and metadata deriving from archaeological contexts. IsoArcH allows to initiate big data initiatives but also highlights research lacks in certain regions or time periods. Among others, it supports the creation of sound baselines, the undertaking of multi-scale analysis, and the realization of extensive studies and syntheses on various research issues such as paleodiet, food production, resource management, migrations, paleoclimate and paleoenvironmental changes.
Country
BExIS is the online data repository and information system of the Biodiversity Exploratories Project (BE). The BE is a German network of biodiversity related working groups from areas such as vegetation and soil science, zoology and forestry. Up to three years after data acquisition, the data use is restricted to members of the BE. Thereafter, the data is usually public available (https://www.bexis.uni-jena.de/ddm/publicsearch/index).
Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
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Phaidra (Permanent Hosting, Archiving and Indexing of Digital Resources and Assets) is the University of Padova Library System’s platform for long-term archiving of digital collections. Phaidra hosts various types of digital object (antiquarian books, manuscripts, photographs, wallcharts, maps, learning objects, films, archive material and museum objects). Phaidra offers a search facility to identify specific objects, and each object can be viewed, downloaded, used and reused to the extent permitted by law and by its associated licences. The objects in the digital collections on the Phaidra platform are sourced from libraries (in large part due to the digitisation projects promoted by the Library System itself), museums and archives at the University of Padova and other institutions, including the Ca’ Foscari University and the Università Iuav in Venice.
The mission of World Data Center for Climate (WDCC) is to provide central support for the German and European climate research community. The WDCC is member of the ISC's World Data System. Emphasis is on development and implementation of best practice methods for Earth System data management. Data for and from climate research are collected, stored and disseminated. The WDCC is restricted to data products. Cooperations exist with thematically corresponding data centres of, e.g., earth observation, meteorology, oceanography, paleo climate and environmental sciences. The services of WDCC are also available to external users at cost price. A special service for the direct integration of research data in scientific publications has been developed. The editorial process at WDCC ensures the quality of metadata and research data in collaboration with the data producers. A citation code and a digital identifier (DOI) are provided and registered together with citation information at the DOI registration agency DataCite.