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Found 60 result(s)

RADaR - Digital Repository of Archived Publications of the Institute for Biological Research “Siniša Stanković”

РАДаР - Репозиторијум Архивираних Дигиталних Радова Института за биолошка истраживања „Синиша Станковић”

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RADaR - Digital Repository of Archived Publications of the Institute for Biological Research “Siniša Stanković” is the institutional digital repository of the Institute for Biological Research “Siniša Stanković” – National Institute of Republic of Serbia, University of Belgrade. The aim of the repository is to provide open access to publications and other research outputs resulting from the projects implemented by the Institute for Biological Research “Siniša Stanković”. The repository uses a DSpace-based software platform developed and maintained by the Belgrade University Computer Centre (RCUB).

Sextant

Infrastructure de Données Géographiques (IDG) marines et littorales

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Sextant is a marine and coastal geographic data infrastructure. It is operated by Scientific Information Systems for the Sea (SISMER) of Ifremer (https://www.ifremer.fr/). Sextant aims to document, disseminate and promote a catalog of data related to the marine environment. For Ifremer's laboratories and partners, as well as for national and European actors working in the marine and coastal field, Sextant provides tools that promote and facilitate the archiving, consultation and availability of these geographical data. Data published by Sextant are available free or restricted. They can be used in accordance with the terms of the Creative Commons license selected by the author of data. Sextant infrastructure and the technologies used are in line with the implementation of the INSPIRE Directive and make it possible to follow the Open Data approach. Some data set published by Sextant has a DOI which enables it to be cited in a publication in a reliable and sustainable way. The long-term preservation of data filed in Sextant is ensured by Ifremer infrastructure.

Collaborative Research Centre 1211 Database

CRC1211DB

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The CRC1211DB is the project-database of the Collaborative Research Centre 1211 "Earth -Evolution at the dry limit" (CRC1211,https://sfb1211.uni-koeln.de/) funded by the German Research Foundation (DFG, German Research Foundation – Projektnummer 268236062). The project-database is a new implementation of the TR32DB and online since 2016. It handles all data including metadata, which are created by the involved project participants from several institutions (e.g. Universities of Cologne, Bonn, Aachen, and the Research Centre Jülich) and research fields (e.g. soil and plant sciences, biology, geography, geology, meteorology and remote sensing). The data is resulting from several field measurement campaigns, meteorological monitoring, remote sensing, laboratory studies and modelling approaches. Furthermore, outcomes of the scientists such as publications, conference contributions, PhD reports and corresponding images are collected.

IFREMER-SISMER Portail de données marines

French Research Institute for Exploitation of the Sea - Scientific Information Systems for the Sea, Oceanographic Data

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SISMER (Scientific Information Systems for the Sea) is Ifremer's service in charge of managing numerous marine databases and information systems which Ifremer is responsible for implementing. The information systems managed by SISMER range from CATDS (SMOS satellite data) to geoscience data (bathymetry, seismics, geological samples), not forgetting water column data (physics and chemistry, data for operational oceanography – Coriolis - Copernicus CMEMS), fisheries data (Harmonie), coastal environment data (Quadrige 2) and deep-sea environment data (Archimède). SISMER therefore plays a pivotal role in marine database management both for Ifremer and for many national, European and international projects.

Critical Zone Observatories data

CZO data

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The NSF-supported Program serves the international scientific community through research, infrastructure, data, and models. We focus on how components of the Critical Zone interact, shape Earth's surface, and support life. ARCHIVED CONTENT: In December 2020, the CZO program was succeeded by the Critical Zone Collaborative Network (CZ Net) https://criticalzone.org/

DNASU plasmid repository

DNASU

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DNASU is a central repository for plasmid clones and collections. Currently we store and distribute over 200,000 plasmids including 75,000 human and mouse plasmids, full genome collections, the protein expression plasmids from the Protein Structure Initiative as the PSI: Biology Material Repository (PSI : Biology-MR), and both small and large collections from individual researchers. We are also a founding member and distributor of the ORFeome Collaboration plasmid collection.

SAHFOS

Sir Alister Hardy Foundation for Ocean Science

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SAHFOS is an internationally funded independent research non-profit organisation responsible for the operation of the Continuous Plankton Recorder (CPR) Survey. As a large-scale global survey, it provides the scientific and policy communities with a basin-wide and long-term measure of the ecological health of marine plankton. Established in 1931, the CPR Survey is the longest running, most geographically extensive marine ecological survey in the world. It has a considerable database of marine plankton and associated metadata that is used by researchers and policy makers to examine strategically important science pillars such as climate change, human health, fisheries, biodiversity, pathogens, invasive species, ocean acidification and natural capital. The Continuous Plankton Recorder (CPR) Survey has merged with the Marine Biological Association. Today the Survey is operated by the Marine Biological Association, based in Plymouth, UK.

DataDOI

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DataDOI is an institutional research data repository managed by University of Tartu Library. DataDOI gathers all fields of research data and stands for encouraging open science and FAIR (Findable, Accessible, Interoperable, Reusable) principles. DataDOI is made for long-term preservation of research data. Each dataset is given a DOI (Digital Object Identifier) through DataCite Estonia Concortium.

PharmGKB

Pharmacogenomics Knowledgebase

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PharmGKB is a comprehensive resource that curates knowledge about the impact of genetic variation on drug response for clinicians and researchers. PharmGKB brings together the relevant data in a single place and adds value by combining disparate data on the same relationship, making it easier to search and easier to view the key aspects and by interpreting the data.PharmGKB provide clinical interpretations of this data, curated pathways and VIP summaries which are not found elsewhere.

EM-DAT

The International Disaster Database

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EM-DAT is a global database on natural and technological disasters, containing essential core data on the occurrence and effects of more than 22,000 disasters in the world, from 1900 to present. EM-DAT provides geographical, temporal, human and economic information on disasters at the country level. The database is compiled from various sources, including UN agencies, non-governmental organisations, insurance companies, research institutes and press agencies.

GUDMAP

GenitoUrinary Development Molecular Anatomy Project

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The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research. The key components are: (1) a molecular atlas of gene expression for the developing organs of the GenitoUrinary (GU) tract; (2) a high resolution molecular anatomy that highlights development of the GU system; (3) mouse strains to facilitate developmental and functional studies within the GU system; (4) tutorials describing GU organogenesis; and (5) rapid access to primary data via the GUDMAP database.

NONCODE

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NONCODE is an integrated knowledge database dedicated to non-coding RNAs (excluding tRNAs and rRNAs). Now, there are 16 species in NONCODE(human, mouse, cow, rat, chicken, fruitfly, zebrafish, celegans, yeast, Arabidopsis, chimpanzee, gorilla, orangutan, rhesus macaque, opossum and platypus).The source of NONCODE includes literature and other public databases. We searched PubMed using key words ‘ncrna’, ‘noncoding’, ‘non-coding’,‘no code’, ‘non-code’, ‘lncrna’ or ‘lincrna. We retrieved the new identified lncRNAs and their annotation from the Supplementary Material or web site of these articles. Together with the newest data from Ensembl , RefSeq, lncRNAdb and GENCODE were processed through a standard pipeline for each species.

Harvard Medical School, Library of Integrated Network-Based Cellular Signatures Database

HMS, LINCS database

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The Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.

Neotoma Paleoecology Database

Neotoma

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Neotoma is a multiproxy paleoecological database that covers the Pliocene-Quaternary, including modern microfossil samples. The database is an international collaborative effort among individuals from 19 institutions, representing multiple constituent databases. There are over 20 data-types within the Neotoma Paleoecological Database, including pollen microfossils, plant macrofossils, vertebrate fauna, diatoms, charcoal, biomarkers, ostracodes, physical sedimentology and water chemistry. Neotoma provides an underlying cyberinfrastructure that enables the development of common software tools for data ingest, discovery, display, analysis, and distribution, while giving domain scientists control over critical taxonomic and other data quality issues.

PAIN repository

Pain and Interoception Imaging Network Repository

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The PAIN Repository is a recently funded NIH initiative, which has two components: an archive for already collected imaging data (Archived Repository), and a repository for structural and functional brain images and metadata acquired prospectively using standardized acquisition parameters (Standardized Repository) in healthy control subjects and patients with different types of chronic pain. The PAIN Repository provides the infrastructure for storage of standardized resting state functional, diffusion tensor imaging and structural brain imaging data and associated biological, physiological and behavioral metadata from multiple scanning sites, and provides tools to facilitate analysis of the resulting comprehensive data sets.

International HapMap Project

国际人类基因组单体型图计划

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<<<!!!<<< OFFLINE >>>!!!>>> A recent computer security audit has revealed security flaws in the legacy HapMap site that require NCBI to take it down immediately. We regret the inconvenience, but we are required to do this. That said, NCBI was planning to decommission this site in the near future anyway (although not quite so suddenly), as the 1,000 genomes (1KG) project has established itself as a research standard for population genetics and genomics. NCBI has observed a decline in usage of the HapMap dataset and website with its available resources over the past five years and it has come to the end of its useful life. The International HapMap Project is a multi-country effort to identify and catalog genetic similarities and differences in human beings. Using the information in the HapMap, researchers will be able to find genes that affect health, disease, and individual responses to medications and environmental factors. The Project is a collaboration among scientists and funding agencies from Japan, the United Kingdom, Canada, China, Nigeria, and the United States. All of the information generated by the Project will be released into the public domain. The goal of the International HapMap Project is to compare the genetic sequences of different individuals to identify chromosomal regions where genetic variants are shared. By making this information freely available, the Project will help biomedical researchers find genes involved in disease and responses to therapeutic drugs. In the initial phase of the Project, genetic data are being gathered from four populations with African, Asian, and European ancestry. Ongoing interactions with members of these populations are addressing potential ethical issues and providing valuable experience in conducting research with identified populations. Public and private organizations in six countries are participating in the International HapMap Project. Data generated by the Project can be downloaded with minimal constraints. The Project officially started with a meeting in October 2002 (https://www.genome.gov/10005336/) and is expected to take about three years.

Birdata

BirdLife Australia

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Birdata is your gateway to BirdLife Australia data including the Atlas of Australian Birds and Nest record scheme. You can use Birdata to draw bird distribution maps and generate bird lists for any part of the country. You can also join in the Atlas and submit survey information to this important environmental database. Birdata is a partnership between Birds Australia and the Tony and Lisette Lewis Foundation's WildlifeLink program to collect and make Birds Australia data available online.

PATRIC

Pathosystems Resource Integration Center

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<<<!!!<<< This repository is no longer available. >>>!!!>>> PATRIC will go offline by mid-December2022. Here is what you need to know. As announced previously, PATRIC, the bacterial BRC, and IRD / ViPR, the viral BRCs, are being merged into the new Bacterial and Viral Bioinformatics Resource Center (BV-BRC). BV-BRC combines the data, tools, and technologies from these BRCs to provide an integrated resource for bacterial and viral genomics-based infectious disease research.

NOAA National Centers for Environmental Information - formerly: National Oceanographic Data Center

NODC

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<<<!!!<<< The demand for high-value environmental data and information has dramatically increased in recent years. To improve our ability to meet that demand, NOAA’s former three data centers—the National Climatic Data Center, the National Geophysical Data Center, and the National Oceanographic Data Center, which includes the National Coastal Data Development Center—have merged into the National Centers for Environmental Information (NCEI). >>>!!!>>> The National Oceanographic Data Center includes the National Coastal Data Development Center (NCDDC) and the NOAA Central Library, which are integrated to provide access to the world's most comprehensive sources of marine environmental data and information. NODC maintains and updates a national ocean archive with environmental data acquired from domestic and foreign activities and produces products and research from these data which help monitor global environmental changes. These data include physical, biological and chemical measurements derived from in situ oceanographic observations, satellite remote sensing of the oceans, and ocean model simulations.

Europeana collections

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Europeana is the trusted source of cultural heritage brought to you by the Europeana Foundation and a large number of European cultural institutions, projects and partners. It’s a real piece of team work. Ideas and inspiration can be found within the millions of items on Europeana. These objects include: Images - paintings, drawings, maps, photos and pictures of museum objects Texts - books, newspapers, letters, diaries and archival papers Sounds - music and spoken word from cylinders, tapes, discs and radio broadcasts Videos - films, newsreels and TV broadcasts All texts are CC BY-SA, images and media licensed individually.

UniProtKB

UniProtKnowledgebase

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The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc). The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data. The UniProt Knowledgebase,is an expertly and richly curated protein database, consisting of two sections called UniProtKB/Swiss-Prot and UniProtKB/TrEMBL.

PLEXdb

Plant Expression Database

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<<<!!!<<< 08.08.2019: Plexdb is no longer online, URLold: http://www.plexdb.org/index.php >>>!!!>>> >>>>!!!! <<<< 13.12.2018: PLEXdb is now a static site after funding stopped from NSF. We have stopped registration of new users; but past users who have data can login when needed and interact with the site. You can download data using the authentication provided at the download page. >>>>!!!!<<<< PLEXdb is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data.

Ningaloo Atlas

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The Ningaloo Atlas was created in response to the need for more comprehensive and accessible information on environmental and socio-economic data on the greater Ningaloo region. As such, the Ningaloo Atlas is a web portal to not only access and share information, but to celebrate and promote the biodiversity, heritage, value, and way of life of the greater Ningaloo region.

Open PHACTS

Open Pharmacological Space

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<<<!!!<<< The Open PHACTS Linked Data API and associated infrastructure was closed down in March 2019 to allow the team to focus on the next phase. http://www.openphactsfoundation.org/open-phacts-platform-update-march-2019/ >>>!!!>>>

Data Repository for the University of Minnesota

DRUM

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Open access repository for digital research created at the University of Minnesota. U of M researchers may deposit data to the Libraries’ Data Repository for U of M (DRUM), subject to our collection policies. All data is publicly accessible. Data sets submitted to the Data Repository are reviewed by data curation staff to ensure that data is in a format and structure that best facilitates long-term access, discovery, and reuse.