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Found 139 result(s)

CDC - Climate Data Center

Deutscher Wetterdienst - DWD

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The CDC Data Catalogue describes the Climate Data of the DWD and provides access to data, descriptions and access methods. Climate Data refers to observations, statistical indices and spatial analyses. CDC comprises Climate Data for Germany, but also global Climate Data, which were collected and processed in the framework of international co-operation. The CDC Data Catalogue is under construction and not yet complete. The purposes of the CDC Data Catalogue are: to provide uniform access to climate data centres and climate datasets of the DWD to describe the climate data according to international metadata standards to make the catalogue information available on the Internet to support the search for climate data to facilitate the access to climate data and climate data descriptions

FlyBase

A Database of Drosophila Genes and Genomes

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FlyBase is a database of genetic, genomic and functional data for Drosophila species, with a focus on the model organism Drosophila melanogaster.FlyBase contains a complete annotation of the Drosophila melanogaster genome that is updated several times per year.It also includes a searchable bibliography of research on Drosophila genetics in the last century. The site also provides a large database of images illustrating the full genome, and several movies detailing embryogenesis.

FANTOM

FANTOM DB

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FANTOM stands for 'Functional Annotation of the Mammalian Genome' and is the name of an international research consortium organized by the RIKEN Omics Science Center. The FANTOM5 project aims to build a full understanding of transcriptional regulation in a human system by generating transcriptional regulatory networks that define every human cell type.

Protein Data Bank in Europe

PDBe

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PDBe is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - we work to collate, maintain and provide access to the global repository of macromolecular structure data. We develop tools, services and resources to make structure-related data more accessible to the biomedical community.

Electron Microscopy Data Bank

EMDB

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The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.

Nucleic Acid Database

NDB

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The NDB is a resource for nucleic acid research and education. The NDB assembles and distributes information about the three-dimensional structures of nucleic acids through a variety of resources, including a searchable database, Atlas, and software

Woods Hole Oceanographic Institution Data Library and Archives

WHOI DLA

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The Data Library and Archives (DLA) is part of the joint library system supported by the Marine Biological Laboratory and the Woods Hole Oceanographic Institution. The DLA holds collections of administrative records, photographs, scientists' data and papers, film and video, historical instruments, as well as books, journals and technical reports.

GAPHYOR

GAz-PHYsics-ORsay

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The repository is no longer available. <<<!!!<<< 2018-08-29: no more access to GAPHYOR >>>!!!>>> Important note: The database was no longer feeded with data or updated in the years 2005-2007. The financial support of the project had been stopped a few yers ahead that time. The maintainance of the IT system couldn't be ensured anymore and system was shutdown in 2015. Please see the other databases in the field.

Crustal Dynamics Data Information System

CDDIS

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The Crustal Dynamics Data Information System (CDDIS) was initially developed to provide a central data bank for NASA's Crustal Dynamics Project (CDP). The Crustal Dynamics Data Information System (CDDIS) supports data archiving and distribution activities for the space geodesy and geodynamics community. The main objectives of the system are to store space geodesy and geodynamics related data products in a central data bank, to maintain information about the archival of these data, and to disseminate these data and information in a timely manner to NASA investigators and cooperating institutions.

GHRC

Global Hydrology Resource Center

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The Global Hydrology Resource Center (GHRC) provides both historical and current Earth science data, information, and products from satellite, airborne, and surface-based instruments. GHRC acquires basic data streams and produces derived products from many instruments spread across a variety of instrument platforms.

World Data Center for Solar-Terrestrial Physics, Moscow

WDC for STP, Moscow

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WDC for STP, Moscow collects, stores, exchanges with other WDCs, disseminates the publications, sends upon requests data on the following Solar-Terrestrial Physics disciplines: Solar Activity and Interplanetary Medium, Cosmic Rays, Ionospheric Phenomena, Geomagnetic Variations.

ProteomeXchange

PX

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The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination. Current members accepting submissions are: The PRIDE PRoteomics IDEntifications database at the European Bioinformatics Institute focusing mainly on shotgun mass spectrometry proteomics data PeptideAtlas/PASSEL focusing on SRM/MRM datasets.

WormBase

facilitating insights into nematode biology

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Launched in 2000, WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and some related nematodes. In addition to their curation work, all sites have ongoing programs in bioinformatics research to develop the next generations of WormBase structure, content and accessibility

NCBI Taxonomy

Entrez Taxonomy

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The NCBI Taxonomy database is a curated set of names and classifications for all of the organisms that are represented in GenBank. The EMBL and DDBJ databases, as well as GenBank, now use the NCBI Taxonomy as the standard classification for nucleotide sequences. Taxonomy Contains the names and phylogenetic lineages of more than 160,000 organisms that have molecular data in the NCBI databases. New taxa are added to the Taxonomy database as data are deposited for them. When new sequences are submitted to GenBank, the submission is checked for new organism names, which are then classified and added to the Taxonomy database.

PRoteomics IDEntifications Database

PRIDE

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The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE encourages and welcomes direct user submissions of mass spectrometry data to be published in peer-reviewed publications.

World Data Center for Cosmic Rays

WDCCR

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The database includes world-wide cosmic-ray neutron observations (pressure-corrected 1 hour counts) since 1953. The date are opened in two formats; one is 4096-byte "longformat" data and the other one is 80-byte "cardformat" data. Since the "cardformat" data are prepared only for quick check of data, the "longformat" data, which include information for data usage (constant, factors, etc), should be used for research works. PS files (compressed) of yearly plots are also available.

World Data Centre for Geomagnetism, Copenhagen

WDC - Geomagnetism, Copenhagen

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The WDC has a FTP-server to distribute the PCN index derived from the geomagnetic observatory Qaanaaq (THL) and the Kp-index data products derived at the geomagnetic observatory Niemegk (NGK). The WDC is also holding extensive archives of magnetograms and other geomagnetic observatory data products that predate the introduction of digital data recording. The material is in analogue form such as film or microfiche. The Polar Cap index (abbreviation PC index) consists of the Polar Cap North (PCN) and the Polar Cap South (PCS) index, which are derived from magnetic measurements taken at the geomagnetic observatories Qaanaaq (THL, Greenland, +85o magnetic latitude) and Vostok (VOS, Antarctica, -83o magnetic latitude), respectively. The idea behind these indices is to estimate the intensity of anti-sunward plasma convection in the polar caps. This convection is associated with electric Hall currents and consequent magnetic field variations perpendicular to the antisunward plasma flow (and related Hall current) which can be monitored at the Qaanaaq and Vostok magnetic observatories. PC aims at monitoring the energy input from solar wind to the magnetosphere (loading activity). The index is constructed in such a way that it has a linear relationship with the merging Electric Field at the magnetopause; consequently PC is given in units of mV/m as for the electric field. In August 2013, the International Association of Geomagnetism and Aeronomy (IAGA) endorsed the PC index. The endorsed PC index is accessible at pcindex.org or through WDC Copenhagen.

NOAA National Centers for Environmental Information - Paleoclimatology Data

Paleoclimatology Data

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Paleoclimatology data are derived from natural sources such as tree rings, ice cores, corals, and ocean and lake sediments. These proxy climate data extend the archive of weather and climate information hundreds to millions of years. The data include geophysical or biological measurement time series and some reconstructed climate variables such as temperature and precipitation. NCEI provides the paleoclimatology data and information scientists need to understand natural climate variability and future climate change. We also operate the World Data Center for Paleoclimatology, which archives and distributes data contributed by scientists around the world.

Incorporated Research Institutions for Seismology

IRIS

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IRIS offers free and open access to a comprehensive data store of raw geophysical time-series data collected from a large variety of sensors, courtesy of a vast array of US and International scientific networks, including seismometers (permanent and temporary), tilt and strain meters, infrasound, temperature, atmospheric pressure and gravimeters, to support basic research aimed at imaging the Earth's interior.

Mouse Genome Informatics

MGI

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MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. The projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, MouseMine Project, MouseCyc Project at MGI

UCSC Genome Browser

University of California Santa Cruz Genome Bioinformatics

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It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. The Browser is a graphical viewer optimized to support fast interactive performance and is an open-source, web-based tool suite built on top of a MySQL database for rapid visualization, examination, and querying of the data at many levels.

The Universal Protein Resource

UniProt

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The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc).

Bavarian Archive for Speech Signals

Bayerisches Archiv für Sprachsignale

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The Bavarian Archive for Speech Signals (BAS) is a public institution hosted by the University of Munich. This institution was founded with the aim of making corpora of current spoken German available to both the basic research and the speech technology communities via a maximally comprehensive digital speech-signal database. The speech material will be structured in a manner allowing flexible and precise access, with acoustic-phonetic and linguistic-phonetic evaluation forming an integral part of it.

Ensembl

e!

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The Ensembl project produces genome databases for vertebrates and other eukaryotic species. Ensembl is a joint project between the European Bioinformatics Institute (EBI) and the Wellcome Trust Sanger Institute (WTSI) to develop a software system that produces and maintains automatic annotation on selected genomes.The Ensembl project was started in 1999, some years before the draft human genome was completed. Even at that early stage it was clear that manual annotation of 3 billion base pairs of sequence would not be able to offer researchers timely access to the latest data. The goal of Ensembl was therefore to automatically annotate the genome, integrate this annotation with other available biological data and make all this publicly available via the web. Since the website's launch in July 2000, many more genomes have been added to Ensembl and the range of available data has also expanded to include comparative genomics, variation and regulatory data. Ensembl is a joint project between European Bioinformatics Institute (EBI), an outstation of the European Molecular Biology Laboratory (EMBL), and the Wellcome Trust Sanger Institute (WTSI). Both institutes are located on the Wellcome Trust Genome Campus in Hinxton, south of the city of Cambridge, United Kingdom.

Expression Atlas

Gene Expression Atlas

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The Expression Atlas provides information on gene expression patterns under different biological conditions such as a gene knock out, a plant treated with a compound, or in a particular organism part or cell. It includes both microarray and RNA-seq data. The data is re-analysed in-house to detect interesting expression patterns under the conditions of the original experiment. There are two components to the Expression Atlas, the Baseline Atlas and the Differential Atlas. The Baseline Atlas displays information about which gene products are present (and at what abundance) in "normal" conditions (e.g. tissue, cell type). It aims to answer questions such as "which genes are specifically expressed in human kidney?". This component of the Expression Atlas consists of highly-curated and quality-checked RNA-seq experiments from ArrayExpress. It has data for many different animal and plant species. New experiments are added as they become available. The Differential Atlas allows users to identify genes that are up- or down-regulated in a wide variety of different experimental conditions such as yeast mutants, cadmium treated plants, cystic fibrosis or the effect on gene expression of mind-body practice. Both microarray and RNA-seq experiments are included in the Differential Atlas. Experiments are selected from ArrayExpress and groups of samples are manually identified for comparison e.g. those with wild type genotype compared to those with a gene knock out. Each experiment is processed through our in-house differential expression statistical analysis pipeline to identify genes with a high probability of differential expression.