Repository details

Protein Data Bank in Europe

Name of repository
Protein Data Bank in Europe
Additional name(s)
  • PDBe
Repository URL
https://www.ebi.ac.uk/pdbe/
Subject(s)
Description
PDBe is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - we work to collate, maintain and provide access to the global repository of macromolecular structure data. We develop tools, services and resources to make structure-related data more accessible to the biomedical community.
Contact(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
227.111 otal PDB entries in the archive
Repository type(s)
  • disciplinary
Mission statement for designated community
https://www.ebi.ac.uk/pdbe/about
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider
  • serviceProvider

Institutions (6)

Institution
BBSRC
Additional name(s)
  • Biological Sciences Research Council
Institution
Country
United Kingdom
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
EU
Additional name(s)
  • European Union
Institution
Country
European Union
Type(s) of responsibility
  • funding
Type of institution
non-profit
Start date of responsibility
2013
End date of responsibility
2015
Institution
European Molecular Biology Laboratory - European Bioinformatics Institute
Additional name(s)
  • EMBL-EBI
Institution
Country
European Union
Type(s) of responsibility
  • general
  • technical
  • funding
Type of institution
non-profit
Institution
Medical Research Council
Additional name(s)
  • MRC
Institution
Country
United Kingdom
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Wellcome Trust
Institution
Country
United Kingdom
Type(s) of responsibility
  • funding
Type of institution
non-profit
Start date of responsibility
2010
End date of responsibility
2014
Institution
Worldwide Protein Data Bank
Additional name(s)
  • wwPDB
Institution
Country
International
Type(s) of responsibility
  • general
Type of institution
non-profit

Policies (4)

Policy Name
EBI Terms of Use
Policy Name
wwPDB charter
Policy Name
wwPDB Policies
Policy Name
Citation Policies

Database access

Type of access to research data repository
open

Data access (2)

Type of access to data
open
Type of access to data
restricted
Data access restriction type(s)
  • other

Data licenses (1)

DataLicense
Public Domain

Data upload (1)

Type of data upload
open

Data upload license (1)

Data upload license name
OneDep
Persistent identifier system(s)
  • DOI
Name of the repository software
  • unknown
Data citation guideline
https://www.rcsb.org/pages/policies#citationPolicies
Enhanced Publication
unknown
Quality management
yes

Application programming interfaces (2)

Type
FTP
Url
ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb/data/structures/all
Type
REST
Url
https://www.ebi.ac.uk/pdbe/api/doc/

Alerting services (3)

Type of alerting service
RSS
Type of alerting service
RSS
Type of alerting service
RSS

Remarks

Remarks
is covered by Elsevier. Protein Data Bank in Europe (PDBe)is a member of Worldwide Protein Data Bank (wwPDB) and EMDataBank. Collaborations: https://www.ebi.ac.uk/pdbe/about/collaborations
Entry date
2013-12-05
Last update
2024-11-06
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Cite this re3data.org record:

re3data.org: Protein Data Bank in Europe; editing status 2024-11-06; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3GW37 last accessed: 2025-06-09