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Found 95 result(s)

RAM Legacy Stock Assessment Database

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The RAM Legacy Stock Assessment Database is a compilation of stock assessment results for commercially exploited marine populations from around the world. The recently updated database offers many graphical and analytic tools to explore the data, as well as new data sets including; assessments from N.W. Africa, assessments from the Mediterranean Sea, assessments from Chile, data sets on Pacific salmon. The database is seeking collaborators to cover parts of the world that we are missing.

dharmae

Data Hub of Australian Research on Marine & Aquatic Ecocultures

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In a changing climate, water raises increasingly complex challenges: concerning its quantity, quality, availability, allocation, use and significance as a habitat, resource and cultural medium. Dharmae, a ‘Data Hub of Australian Research on Marine and Aquatic Ecocultures’ brings together multi-disciplinary research data relating to water in all these forms. The term “ecoculture” guides the development of this collection and its approach to data discovery. Ecoculture recognizes that, since nature and culture are inextricably linked, there is a corresponding need for greater interconnectedness of the different knowledge systems applied to them.

National Ecosystem Data Bank

EcoDB

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National ecosystem data bank (EcoDB) is a public professional scientific data repository supported by the National Ecosystem Science Data Center (NESDC) for researchers in ecology and related fields, which provides long-term preservation, publication, sharing and access services of scientific data. EcoDB provides services for both individual researchers and scientific journals. Individuals can use this repository to store, manage and publish scientific data, get feedback from others on the data, and discover scientific data shared by others through this repository. Journals can use the repository to gather, manage and review the supporting data of submitted paper. At the same time, journals can timely publish these supporting data according to their own data policies.

NCBI dbVar

Database of genomic structural VARiation

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The dbVar is a database of genomic structural variation containing data from multiple gene studies. Users can browse data containing the number of variant cells from each study, and filter studies by organism, study type, method and genomic variant. Organisms include human, mouse, cattle and several additional animals. ***NCBI will phase out support for non-human organism data in dbSNP and dbVar beginning on September 1, 2017 ***

German Federation for Biological Data

GFBio

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The project brings together national key players providing environmentally related biological data and services to develop the ‘German Federation for Biological Data' (GFBio). The overall goal is to provide a sustainable, service oriented, national data infrastructure facilitating data sharing and stimulating data intensive science in the fields of biological and environmental research.

Taiwan Biodiversity Information Facility

TaiBIF

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"TaiBIF" stands for Taiwan Biodiversity Information Facility. It is the Taiwan portal of GBIF, and is in charge of integrating Taiwan's biodiversity information, including lists of species and local experts, illustrations of species, introduction of endemic species and invasive species, Taiwan's terrestrial and marine organisms, biodiversity literature, geographical and environmental information, information about relevant institutions, organizations, projects, and observation spots, the Catalog of Life (a list of Taiwanese endemic species), and publications.

GigaDB

GigaScience Database

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GigaDB primarily serves as a repository to host data and tools associated with articles published by GigaScience Press; GigaScience and GigaByte (both are online, open-access journals). GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support a unit-of-work (article or study). GigaDB allows the integration of manuscript publication with supporting data and tools.

Emage

e-Mouse Atlas of Gene Expression

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EMAGE (e-Mouse Atlas of Gene Expression) is an online biological database of gene expression data in the developing mouse (Mus musculus) embryo. The data held in EMAGE is spatially annotated to a framework of 3D mouse embryo models produced by EMAP (e-Mouse Atlas Project). These spatial annotations allow users to query EMAGE by spatial pattern as well as by gene name, anatomy term or Gene Ontology (GO) term. EMAGE is a freely available web-based resource funded by the Medical Research Council (UK) and based at the MRC Human Genetics Unit in the Institute of Genetics and Molecular Medicine, Edinburgh, UK.

Boola Boola Forest bird study

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This study assessed differences in avian biodiversity across different forest age-classes, including mature stands (> 100 years), in a managed, mixed-species eucalypt forest located in Gippsland, south-eastern Australia. Avian surveys and detailed habitat measurements were initially carried out in 50 two hectare stands ranging in age from 100 years. Extensive wildfire which occurred during the study reduced the number of sites to 28 (seven in each of four age classes) upon which analyses and inferences were made. Mature vegetation (> 100 years) had the greatest richness, abundance and biomass of birds. Key ecological resources, such as tree-hollows for nesting, generally occurred mostly in stands > 60 years. There were quantum increases in all measures of avian biodiversity in mature stands (> 100 years). The visualisation of the survey data is part of an interoperable web-GIS maintained by the Centre for eResearch and Digital Innovation (CeRDI) at Federation University Australia (FedUni).

Combined QTL Map of Dairy Cattle Traits

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>>>!!! <<< 2021-09-01: repository is offline >>>!!!<<< Background: Many studies have been conducted to detect quantitative trait loci (QTL) in dairy cattle. However, these studies are diverse in terms of their differing resource populations, marker maps, phenotypes, etc, and one of the challenges is to be able to synthesise this diverse information. This web page has been constructed to provide an accessible database of studies, providing a summary of each study, facilitating an easier comparison across studies. However, it also highlights the need for uniform reporting of results of studies, to facilitate more direct comparisons being made. Description: Studies recorded in this database include complete and partial genome scans, single chromosome scans, as well as fine mapping studies, and contain all known reports that were published in peer-reviewed journals and readily available conference proceedings, initially up to April 2005. However, this data base is being added to, as indicated by the last web update. Note that some duplication of results will occur, in that there may be a number of reports on the same resource population, but utilising different marker densities or different statistical methodologies. The traits recorded in this map are milk yield, milk composition (protein yield, protein %, fat yield, fat %), and somatic cell score (SCS).

HJ Andrews Experimental Forest

HJA

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The Andrews Forest is a place of inquiry. Our mission is to support research on forests, streams, and watersheds, and to foster strong collaboration among ecosystem science, education, natural resource management, and the humanities. Our place and our work are administered cooperatively by the USDA Forest Service's Pacific Northwest Research Station, Oregon State University, and the Willamette National Forest. First established in 1948 as an US Forest Service Experimental Forest, the H.J. Andrews is a 16,000-acre ecological research site in Oregon's beautiful western Cascades Mountains. The landscape is home to iconic Pacific Northwest old-growth forests of Cedar and Hemlock, and moss-draped ancient Douglas Firs; steep terrain; and fast, cold-running streams. In 1980 the Andrews became a charter member of the National Science Foundation's Long-Term Ecological Research (LTER) Program.

HAGR

Human Ageing Genomic Resources

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The Human Ageing Genomic Resources (HAGR) is a collection of databases and tools designed to help researchers study the genetics of human ageing using modern approaches such as functional genomics, network analyses, systems biology and evolutionary analyses.

National Biodiversity Data Centre - Biodiversity Maps

MApping Ireland's Wildlife

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Biodiversity Maps provides access to high quality information on Ireland's biological diversity. Use the system to find out what is known about the different species that occur in Ireland, where our protected and threatened species occur, and who is recoding biodiversity. Also find out what is known about the biodiversity of your locality. The National Biodiversity Data Centre endeavours to provide high quality information through this data portal.

North American Breeding Bird Survey

NABBS

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The BBS is a cooperative effort between the U.S. Geological Survey's Patuxent Wildlife Research Center and Environment Canada's Canadian Wildlife Service to monitor the status and trends of North American bird populations. Following a rigorous protocol, BBS data are collected by thousands of dedicated participants along thousands of randomly established roadside routes throughout the continent. Professional BBS coordinators and data managers work closely with researchers and statisticians to compile and deliver these population data and population trend analyses on more than 400 bird species, for use by conservation managers, scientists, and the general public.

Mutant Mouse Resource & Research Centers

MMRRC

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The MMRRC is the nation’s premier national public repository system for mutant mice. Funded by the NIH continuously since 1999, the MMRRC archives and distributes scientifically valuable spontaneous and induced mutant mouse strains and ES cell lines for use by the biomedical research community. The MMRRC consists of a national network of breeding and distribution repositories and an Informatics Coordination and Service Center located at 4 major academic centers across the nation. The MMRRC is committed to upholding the highest standards of experimental design and quality control to optimize the reproducibility of research studies using mutant mice.

FishSounds

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FishSounds presents a compilation of acoustic recordings and published information on sound production across all extant fish species globally. We hope this information can be used to advance research into fish behavior, passive acoustic monitoring, and human impacts on underwater soundscapes as well as serve as a public resource for anyone interested in learning more about fish sounds. This work is the product of an international collaboration between researchers and developers from five organizations. We have taken a cross-disciplinary approach, combining expertise in fish ecology, bioacoustics, and data management to produce a website that we hope will serve the wider marine research community. All versions of the FishSounds website and associated publications and products are stored in a long-term Dataverse dataset as a permanent repository (https://doi.org/10.5683/SP2/TACOUX).

Neotoma Paleoecology Database

Neotoma

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Neotoma is a multiproxy paleoecological database that covers the Pliocene-Quaternary, including modern microfossil samples. The database is an international collaborative effort among individuals from 19 institutions, representing multiple constituent databases. There are over 20 data-types within the Neotoma Paleoecological Database, including pollen microfossils, plant macrofossils, vertebrate fauna, diatoms, charcoal, biomarkers, ostracodes, physical sedimentology and water chemistry. Neotoma provides an underlying cyberinfrastructure that enables the development of common software tools for data ingest, discovery, display, analysis, and distribution, while giving domain scientists control over critical taxonomic and other data quality issues.

DigiMorph

Digital Morphology

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The Digital Morphology library, part of the National Science Foundation Digital Libraries Initiative, is a dynamic archive of information on digital morphology and high-resolution X-ray computed tomography of biological specimens. Digital Morphology, part of the National Science Foundation Digital Libraries Initiative, develops and serves unique 2D and 3D visualizations of the internal and external structure of living and extinct vertebrates, and a growing number of 'invertebrates.' The Digital Morphology library contains nearly a terabyte of imagery of natural history specimens that are important to education and central to ongoing cutting-edge research efforts.

VEuPathDB

formerly: Eukaryotic Pathogen Database Resources

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EuPathDB (formerly ApiDB) is an integrated database covering the eukaryotic pathogens in the genera Acanthamoeba, Annacaliia, Babesia, Crithidia, Cryptosporidium, Edhazardia, Eimeria, Encephalitozoon, Endotrypanum, Entamoeba, Enterocytozoon, Giardia, Gregarina, Hamiltosporidium, Leishmania, Nematocida, Neospora, Nosema, Plasmodium, Theileria, Toxoplasma, Trichomonas, Trypanosoma and Vavraia, Vittaforma). While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera.

PlasmoDB

Plasmodium Genomics Resource

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PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including malaria.

Gene Expression Nervous System Atlas

GENSAT

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The GENSAT project aims to map the expression of genes in the central nervous system of the mouse. It is a collection of pictorial gene expression maps of the brain and spinal cord of the mouse.

megx.net

Marine Ecological GenomiX

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<<<!!!<<< This repository is no longer open to the public !!! >>>!!!>>>

NAGRP Blast Center

National Animal Genome Research Program Blast Center

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NAGRP Blast Center aggregates various sequence databases and makes them accessible via its website.

World Register of Marine Species

WoRMS

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The World Register of Marine Species (WoRMS) integrates approximately 100 marine datbases to provide an authoritative and comprehensive list of marine organisms. WoRMS has an editorial system where taxonomic groups are managed by experts responsible for the quality of the information. WorMS register of marine species emerged from the European Register of Marine Species (ERMS) and the Flanders Marine Institute (VLIZ). WoRMS is a contribution to Lifewatch, Catalogue of Life, Encyclopedia of Life, Global Biodiversity Information Facility and the Census of Marine Life.

Freshwater Biodiversity Data Portal

BIOFRESH

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The aim of the Freshwater Biodiversity Data Portal is to integrate and provide open and free access to freshwater biodiversity data from all possible sources. To this end, we offer tools and support for scientists interested in documenting/advertising their dataset in the metadatabase, in submitting or publishing their primary biodiversity data (i.e. species occurrence records) or having their dataset linked to the Freshwater Biodiversity Data Portal. This information portal serves as a data discovery tool, and allows scientists and managers to complement, integrate, and analyse distribution data to elucidate patterns in freshwater biodiversity. The Freshwater Biodiversity Data Portal was initiated under the EU FP7 BioFresh project and continued through the Freshwater Information Platform (http://www.freshwaterplatform.eu). To ensure the broad availability of biodiversity data and integration in the global GBIF index, we strongly encourages scientists to submit any primary biodiversity data published in a scientific paper to national nodes of GBIF or to thematic initiatives such as the Freshwater Biodiversity Data Portal.