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Found 73 result(s)

FAIRDOMHub

The SEEK datafiles

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The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. FAIRDOM (Web Site) will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.

U.S. Geological Survey

including: USGS Science Data Catalog

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USGS data and tools are the digital information in a format suitable for direct input to software that can analyze its meaning in the scientific, engineering, or business context for which the data were collected.

TROLLing

Tromsø Repository of Language and Linguistics

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The Tromsø Repository of Language and Linguistics (TROLLing) is a FAIR-aligned repository of linguistic data and statistical code. The archive is open access, which means that all information is available to everyone. All data are accompanied by searchable metadata that identify the researchers, the languages and linguistic phenomena involved, the statistical methods applied, and scholarly publications based on the data (where relevant). Linguists worldwide are invited to deposit data and statistical code used in their linguistic research. TROLLing is a special collection within DataverseNO (http://doi.org/10.17616/R3TV17), and C Centre within CLARIN (Common Language Resources and Technology Infrastructure, a networked federation of European data repositories; http://www.clarin.eu/), and harvested by their Virtual Language Observatory (VLO; https://vlo.clarin.eu/).

Gulf of Mexico Research Initiative Information and Data Cooperative

GRIIDC

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The Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) is a team of researchers, data specialists and computer system developers who are supporting the development of a data management system to store scientific data generated by Gulf of Mexico researchers. The Master Research Agreement between BP and the Gulf of Mexico Alliance that established the Gulf of Mexico Research Initiative (GoMRI) included provisions that all data collected or generated through the agreement must be made available to the public. The Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC) is the vehicle through which GoMRI is fulfilling this requirement. The mission of GRIIDC is to ensure a data and information legacy that promotes continual scientific discovery and public awareness of the Gulf of Mexico Ecosystem.

Rhea

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Rhea is a freely available and comprehensive resource of expert-curated biochemical reactions. It has been designed to provide a non-redundant set of chemical transformations for applications such as the functional annotation of enzymes, pathway inference and metabolic network reconstruction. There are three types of reaction participants (reactants and products): Small molecules, Rhea polymers, Generic compounds. All three types of reaction participants are linked to the ChEBI database (Chemical Entities of Biological Interest) which provides detailed information about structure, formula and charge. Rhea provides built-in validations that ensure both mass and charge balance of the reactions. We have populated the database with the reactions found in the enzyme classification (i.e. in the IntEnz and ENZYME databases), extending it with additional known reactions of biological interest. While the main focus of Rhea is enzyme-catalysed reactions, other biochemical reactions (including those that are often termed "spontaneous") also are included.

VecNet

Vector-Borne Disease Network

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<<<!!!<<< The repository is no longer available. 2019-09-06: no more access to VecNet >>>!!!>>>

Centre National de Ressources Textuelles et Lexicales

CNRTL

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Created in 2005 by the CNRS, CNRTL unites in a single portal, a set of linguistic resources and tools for language processing. The CNRTL includes the identification, documentation (metadata), standardization, storage, enhancement and dissemination of resources. The sustainability of the service and the data is guaranteed by the backing of the UMR ATILF (CNRS - Université Nancy), support of the CNRS and its integration in the excellence equipment project ORTOLANG .

The Global Proteome Machine

GPM

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The Global Proteome Machine (GPM) is a protein identification database. This data repository allows users to post and compare results. GPM's data is provided by contributors like The Informatics Factory, University of Michigan, and Pacific Northwestern National Laboratories. The GPM searchable databases are: GPMDB, pSYT, SNAP, MRM, PEPTIDE and HOT.

CLARIN-PL

Language Technology Centre

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Polish CLARIN node – CLARIN-PL Language Technology Centre – is being built at Wrocław University of Technology. The LTC is addressed to scholars in the humanities and social sciences. Registered users are granted free access to digital language resources and advanced tools to explore them. They can also archive and share their own language data (in written, spoken, video or multimodal form).

Marine Data Archive

MDA

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The Marine Data Archive (MDA) is an online repository specifically developed to independently archive data files in a fully documented manner. The MDA can serve individuals, consortia, working groups and institutes to manage data files and file versions for a specific context (project, report, analysis, monitoring campaign), as a personal or institutional archive or back-up system and as an open repository for data publication.

TalkBank

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TalkBank provides transcripts, audio and video of communicative interactions for research in human and animal communication.

ARM Data Center

Atmospheric Radiation Measurement Facility Data Center

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US Department of Energy’s Atmospheric Radiation Measurement (ARM) Data Center is a long-term archive and distribution facility for various ground-based, aerial and model data products in support of atmospheric and climate research. ARM facility currently operates over 400 instruments at various observatories (https://www.arm.gov/capabilities/observatories/). ARM Data Center (ADC) Archive currently holds over 11,000 data products with a total holding of over 3 petabytes of data that dates back to 1993, these include data from instruments, value added products, model outputs, field campaign and PI contributed data. The data center archive also includes data collected by ARM from related program (e.g., external data such as NASA satellite).

ThermoML

Representation of Published Experimental Data

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ThermoML presents published experimental data extracted from 5 major journals in the field and links to ThermoML files, which represent experimental thermophysical and thermochemical property data reported in the corresponding articles. At the same time ThermoML is an XML-Based IUPAC Standard for Storage and Exchange of Experimental Thermophysical and Thermochemical Property Data.

CLARIN repository at the University of Tübingen

CLARIN Center Tübingen

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The repository is part of the National Research Data Infrastructure initiative Text+, in which the University of Tübingen is a partner. It is housed at the Department of General and Computational Linguistics. The infrastructure is maintained in close cooperation with the Digital Humanities Centre, which is a core facility of the university, colaborating with the library and computing center of the university. Integration of the repository into the national CLARIN-D and international CLARIN infrastructures gives it wide exposure, increasing the likelihood that the resources will be used and further developed beyond the lifetime of the projects in which they were developed. Among the resources currently available in the Tübingen Center Repository, researchers can find widely used treebanks of German (e.g. TüBa-D/Z), the German wordnet (GermaNet), the first manually annotated digital treebank (Index Thomisticus), as well as descriptions of the tools used by the WebLicht ecosystem for natural language processing.

XNAT CENTRAL

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XNAT CENTRAL is a publicly accessible datasharing portal at Washinton University Medical School using XNAT software. XNAT provides neuroimaging data through a web interface and a customizable open source platform. XNAT facilitates data uploads and downloads for data sharing, processing and organization. NOTICE: Central XNAT will be decommissioned on October 15, 2023. New project creation is no longer permitted.

PlutoF

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An online data management workbench and computing service provider for biology and related disciplines.

InterPro

protein sequence analysis & classification

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InterPro collects information about protein sequence analysis and classification, providing access to a database of predictive protein signatures used for the classification and automatic annotation of proteins and genomes. Sequences in InterPro are classified at superfamily, family, and subfamily. InterPro predicts the occurrence of functional domains, repeats, and important sites, and adds in-depth annotation such as GO terms to the protein signatures.

CCSS Data & Reproduction Archive

Cornell Center for Social Sciences Data & Reproduction Archive

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The Cornell Center for Social Sciences (CCSS) houses an extensive collection of research data files in the social sciences with particular emphasis on data that matches the interests of Cornell University researchers. CCSS intentionally uses a broad definition of social sciences in recognition of the interdisciplinary nature of Cornell research. CCSS collects and maintains digital research data files in the social sciences, with a current emphasis on Cornell-based social science research, Results Reproduction packages, and potentially at-risk datasets. Our archive historically has focused on a broad range of social science data, including data on demography, economics and labor, political and social behavior, family life, and health. You can search our holdings or browse studies by subject area.

CUAHSI

Universities Allied for Water Research

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CUAHSI's Hydrologic Information System (CUAHSI-HIS) provides web services, tools, standards and procedures that enhance access to more and better data for hydrologic analysis

NF Data Portal

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The NF Data Portal is designed to help openly explore and share NF datasets, analysis tools, resources, and publications related to neurofibromatosis. Anyone can join the NF Open Science Initiative (NF-OSI) to participate! We welcome contributions from anyone in the neurofibromatosis and schwannomatosis research community, such as original datasets generated by the community or analyses of data from the NF Data Portal.

PRoteomics IDEntifications Database

PRIDE

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The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE encourages and welcomes direct user submissions of mass spectrometry data to be published in peer-reviewed publications.

Kyoto Encyclopedia of Genes and Genomes

KEGG

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KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies

NSF Arctic Data Center

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The Arctic Data Center is the primary data and software repository for the Arctic section of NSF Polar Programs. The Center helps the research community to reproducibly preserve and discover all products of NSF-funded research in the Arctic, including data, metadata, software, documents, and provenance that links these together. The repository is open to contributions from NSF Arctic investigators, and data are released under an open license (CC-BY, CC0, depending on the choice of the contributor). All science, engineering, and education research supported by the NSF Arctic research program are included, such as Natural Sciences (Geoscience, Earth Science, Oceanography, Ecology, Atmospheric Science, Biology, etc.) and Social Sciences (Archeology, Anthropology, Social Science, etc.). Key to the initiative is the partnership between NCEAS at UC Santa Barbara, DataONE, and NOAA’s NCEI, each of which bring critical capabilities to the Center. Infrastructure from the successful NSF-sponsored DataONE federation of data repositories enables data replication to NCEI, providing both offsite and institutional diversity that are critical to long term preservation.