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Found 27 result(s)
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VAMDC aims to be an interoperable e-infrastructure that provides the international research community with access to a broad range of atomic and molecular (A&M) data compiled within a set of A&M databases accessible through the provision of this portal and of user software. Furthermore VAMDC aims to provide A&M data providers and compilers with a large dissemination platform for their work.
VAMDC infrastructure was established to provide a service to a wide international research community and has been developed in conjunction with consultations and advice from the A&M user community.
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FungiDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB was first released in early 2011 as a collaborative project between EuPathDB and the group of Jason Stajich (University of California, Riverside). At the end of 2015, FungiDB was integrated into the EuPathDB bioinformatic resource center. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining.
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IMGT/LIGM-DB is a comprehensive database of Immunoglobulins (IG) and T cell Receptors (TR) from human and other vertebrates, with translation for fully annotated sequences.
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Giardia lamblia is a significant, environmentally transmitted, human pathogen and an amitochondriate protist. It is a major contributor to the enormous worldwide burden of human diarrheal diseases, yet the basic biology of this parasite is not well understood. No virulence factor has been identified. The Giardia lamblia genome contains only 12 million base pairs distributed onto five chromosomes. Its analysis promises to provide insights about the origins of nuclear genome organization, the metabolic pathways used by parasitic protists, and the cellular biology of host interaction and avoidance of host immune systems.
Since the divergence of Giardia lamblia lies close to the transition between eukaryotes and prokaryotes in universal ribosomal RNA phylogenies, it is a valuable, if not unique, model for gaining basic insights into genetic innovations that led to formation of eukaryotic cells. In evolutionary terms, the divergence of this organism is at least twice as ancient as the common ancestor for yeast and man. A detailed study of its genome will provide insights into an early evolutionary stage of eukaryotic chromosome organization as well as other aspects of the prokaryotic / eukaryotic divergence.
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The Illinois Data Bank is a public access data repository that collects, disseminates, and provides persistent and reliable access to the research data of faculty, staff, and students at the University of Illinois at Urbana-Champaign. Faculty, staff, graduate students can deposit their research data directly into the Illinois Data Bank and receive a DOI for citation purposes.
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MTD is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs. Regarding the core features, the MTD browses genes based on their neighboring genomic coordinates or joint KEGG pathway and provides expression information on exons, transcripts, and genes by integrating them into a genome browser. We developed a novel nomenclature for each transcript that considers its genomic position and transcriptional features.
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VectorBase provides data on arthropod vectors of human pathogens. Sequence data, gene expression data, images, population data, and insecticide resistance data for arthropod vectors are available for download. VectorBase also offers genome browser, gene expression and microarray repository, and BLAST searches for all VectorBase genomes. VectorBase Genomes include Aedes aegypti, Anopheles gambiae, Culex quinquefasciatus, Ixodes scapularis, Pediculus humanus, Rhodnius prolixus. VectorBase is one the Bioinformatics Resource Centers (BRC) projects which is funded by National Institute of Allergy and Infectious Diseases (NAID).
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Phaidra (Permanent Hosting, Archiving and Indexing of Digital Resources and Assets) is the University of Padua Library System’s platform for long-term archiving of digital collections.
Phaidra hosts various types of digital objects (antiquarian books, manuscripts, photographs, wallcharts, maps, learning objects, films, archive material and museum objects). Phaidra offers a search facility to identify specific objects, and each object can be viewed, downloaded, used and reused to the extent permitted by law and by its associated licences.
The objects in the digital collections on the Phaidra platform are sourced from libraries (in large part due to the digitisation projects promoted by the Library System itself), museums and archives at the University of Padua and other institutions, including the Ca’ Foscari University and the Università Iuav in Venice.
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Virtual Fly Brain (VFB) - an interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster CNS.
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The NCBI Short Genetic Variations database, commonly known as dbSNP, catalogs short variations in nucleotide sequences from a wide range of organisms. These variations include single nucleotide variations, short nucleotide insertions and deletions, short tandem repeats and microsatellites. Short Genetic Variations may be common, thus representing true polymorphisms, or they may be rare. Some rare human entries have additional information associated withthem, including disease associations, genotype information and allele origin, as some variations are somatic rather than germline events.
***NCBI will phase out support for non-human organism data in dbSNP and dbVar beginning on September 1, 2017***
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GESIS preserves (mainly quantitative) social research data to make it available to the scientific research community. The data is described in a standardized way, secured for the long term, provided with a permanent identifier (DOI), and can be easily found and reused through browser-optimized catalogs (https://search.gesis.org/).
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NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications. It contains contributions from over 80 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. To date, NeuroMorpho.Org is the largest collection of publicly accessible 3D neuronal reconstructions and associated metadata which can be used for detailed single cell simulations.
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Codex Sinaiticus is one of the most important books in the world. Handwritten well over 1600 years ago, the manuscript contains the Christian Bible in Greek, including the oldest complete copy of the New Testament.
The Codex Sinaiticus Project is an international collaboration to reunite the entire manuscript in digital form and make it accessible to a global audience for the first time. Drawing on the expertise of leading scholars, conservators and curators, the Project gives everyone the opportunity to connect directly with this famous manuscript.
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Earthdata powered by EOSDIS (Earth Observing System Data and Information System) is a key core capability in NASA’s Earth Science Data Systems Program. It provides end-to-end capabilities for managing NASA’s Earth science data from various sources – satellites, aircraft, field measurements, and various other programs. EOSDIS uses the metadata and service discovery tool Earthdata Search https://search.earthdata.nasa.gov/search.
The capabilities of EOSDIS constituting the EOSDIS Science Operations are managed by NASA's Earth Science Data and Information System (ESDIS) Project. The capabilities include: generation of higher level (Level 1-4) science data products for several satellite missions; archiving and distribution of data products from Earth observation satellite missions, as well as aircraft and field measurement campaigns. The EOSDIS science operations are performed within a distributed system of many interconnected nodes - Science Investigator-led Processing Systems (SIPS), and distributed, discipline-specific, Earth science Distributed Active Archive Centers (DAACs) with specific responsibilities for production, archiving, and distribution of Earth science data products. The DAACs serve a large and diverse user community by providing capabilities to search and access science data products and specialized services.
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The CLARIN Centre at the University of Copenhagen, Denmark, hosts and manages a data repository (CLARIN-DK-UCPH Repository), which is part of a research infrastructure for humanities and social sciences financed by the University of Copenhagen.
The CLARIN-DK-UCPH Repository provides easy and sustainable access for scholars in the humanities and social sciences to digital language data (in written, spoken, video or multimodal form) and provides advanced tools for discovering, exploring, exploiting, annotating, and analyzing data. CLARIN-DK also shares knowledge on Danish language technology and resources and is the Danish node in the European Research Infrastructure Consortium, CLARIN ERIC.
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The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.
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The IUCN Red List of Threatened Species provides taxonomic, conservation status and distribution data on plants and animals that are critically endangered, endangered and vulnerable. Data are available in Esri File Geodatabase format, Esri Shapefile format, and Excel format.
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The CALIPSO satellite provides new insight into the role that clouds and atmospheric aerosols play in regulating Earth's weather, climate, and air quality.
CALIPSO combines an active lidar instrument with passive infrared and visible imagers to probe the vertical structure and properties of thin clouds and aerosols over the globe. CALIPSO was launched on April 28, 2006, with the CloudSat satellite.
CALIPSO and CloudSat are highly complementary and together provide new, never-before-seen 3D perspectives of how clouds and aerosols form, evolve, and affect weather and climate. CALIPSO and CloudSat fly in formation with three other satellites in the A-train constellation to enable an even greater understanding of our climate system.
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The WDC is concerned with the collection, management, distribution and utilization of data from Chinese provinces, autonomous regions and counties,including:
Resource data:management,distribution and utlilzation of land, water, climate, forest, grassland, minerals, energy, etc.
Environmental data:pollution,environmental quality, change, natural disasters,soli erosion, etc.
Biological resources:animals, plants,wildlife
Social economy:agriculture, industry, transport, commerce,infrastructure,etc.
Population and labor
Geographic background data on scales of 1:4M,1:1M, 1:(1/2)M, 1:2500, etc.
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Europeana is the trusted source of cultural heritage brought to you by the Europeana Foundation and a large number of European cultural institutions, projects and partners. It’s a real piece of team work.
Ideas and inspiration can be found within the millions of items on Europeana. These objects include:
Images - paintings, drawings, maps, photos and pictures of museum objects
Texts - books, newspapers, letters, diaries and archival papers
Sounds - music and spoken word from cylinders, tapes, discs and radio broadcasts
Videos - films, newsreels and TV broadcasts
All texts are CC BY-SA, images and media licensed individually.
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The CCHDO provides access to standard, well-described datasets from reference-quality repeat hydrography expeditions. It curates high quality full water column Conductivity-Temperature-Depth (CTD), hydrographic, carbon and tracer data from over 2,500 cruises from ~30 countries. It is the official data center for CTD and water sample profile data from the Global Ocean Ship-Based Hydrographic Investigations Program (GO-SHIP), as well as for WOCE, US Hydro, and other high quality repeat hydrography lines (e.g. SOCCOM, HOT, BATS, WOCE, CARINA.)
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LONI’s Image and Data Archive (IDA) is a secure data archiving system. The IDA uses a robust infrastructure to provide researchers with a flexible and simple interface for de-identifying, searching, retrieving, converting, and disseminating their biomedical data. With thousands of investigators across the globe and more than 21 million data downloads to data, the IDA guarantees reliability with a fault-tolerant network comprising multiple switches, routers, and Internet connections to prevent system failure.
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The Immunology Database and Analysis Portal (ImmPort) archives clinical study and trial data generated by NIAID/DAIT-funded investigators. Data types housed in ImmPort include subject assessments i.e., medical history, concomitant medications and adverse events as well as mechanistic assay data such as flow cytometry, ELISA, ELISPOT, etc. --- You won't need an ImmPort account to search for compelling studies, peruse study demographics, interventions and mechanistic assays. But why stop there? What you really want to do is download the study, look at each experiment in detail including individual ELISA results and flow cytometry files. Perhaps you want to take those flow cytometry files for a test drive using FLOCK in the ImmPort flow cytometry module. To download all that interesting data you will need to register for ImmPort access.
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The Climate Change Centre Austria - Data Centre provides the central national archive for climate data and information.
The data made accessible includes observation and measurement data, scenario data, quantitative and qualitative data, as well as the measurement data and findings of research projects.
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- Biology
- Agriculture, Forestry, Horticulture and Veterinary Medicine
- Chemistry
- Physics
- Geosciences (including Geography)
- Atmospheric Science
- Geology and Palaeontology
- Geodesy, Photogrammetry, Remote Sensing, Geoinformatics, Cartogaphy
- Geochemistry, Mineralogy and Crystallography
- Oceanography
- Physical Geography
- Human Geography
- Life Sciences
- Agriculture, Forestry, Horticulture and Veterinary Medicine
- Natural Sciences
- Atmospheric Science and Oceanography
- Geophysics and Geodesy
- Geochemistry, Mineralogy and Crystallography
- Geography
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<<<!!!<<< This repository is no longer available. >>>!!!>>>
- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-06-21
