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Found 25 result(s)

ExPASy Bioinformatics Resource Portal

SIB Bioinformatics Resource Portal

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Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositories and databases of SIB. For example: array map, MetaNetX, SWISS-MODEL and World-2DPAGE, and many others see a list here http://www.expasy.org/resources

Open Tree of Life

Tree of Life - Evolution

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The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.

idUS

Depósito de Investigación Universidad de Sevilla

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idUS is the digital archive that gives access to full text of the scientific production of the University of Seville and their datasets. Its objective is to gather, preserve and disseminate the documents and data resulting from the scientific activity of the University, making the documents visible, accessible, recoverable, usable and preservable for any user.

KU Leuven RDR

KU Leuven Research Data Repository

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KU Leuven RDR (pronounced "RaDaR") is KU Leuven's Research Data Repository, built on Dataverse.org - open source repository software built by Harvard University. RDR gives KU Leuven researchers a one-stop platform to upload, describe, and share their research data, conveniently and with support from university staff.

FlyReactome

a curated knowledgebase of drosophila melanogaster pathways

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<<<!!!<<< This repository is no longer available. This record is out dated >>>!!!>>>- eir fields, maintained by the FlyReactome staff.

NCBI Assembly

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<<<!!!<<< Effective May 2024, NCBI's Assembly resource will no longer be available. NCBI Assembly data can now be found on the NCBI Datasets genome pages. https://www.re3data.org/repository/r3d100014298 >>>!!!>>> A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.

The Monarch Initiative

Monarch Initiative

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As with most biomedical databases, the first step is to identify relevant data from the research community. The Monarch Initiative is focused primarily on phenotype-related resources. We bring in data associated with those phenotypes so that our users can begin to make connections among other biological entities of interest. We import data from a variety of data sources. With many resources integrated into a single database, we can join across the various data sources to produce integrated views. We have started with the big players including ClinVar and OMIM, but are equally interested in boutique databases. You can learn more about the sources of data that populate our system from our data sources page https://monarchinitiative.org/about/sources.

Hardwood Genomics Project

HWG

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This database serves forest tree scientists by providing online access to hardwood tree genomic and genetic data, including assembled reference genomes, transcriptomes, and genetic mapping information. The web site also provides access to tools for mining and visualization of these data sets, including BLAST for comparing sequences, Jbrowse for browsing genomes, Apollo for community annotation and Expression Analysis to build gene expression heatmaps.

UBIRA eData

University of Birmingham eData Repository

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The UBIRA eData repository is a multidisciplinary online service for the registration, preservation and publication of research datasets produced or collected at the University of Birmingham. It is part of the University of Birmingham Research Archive (UBIRA).

Teesside University Research Data Repository

TU Research Data Repository

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Teesside University Research Data Repository links to the University's Research Portal and enables your datasets to be linked to your staff profile. It helps prevent data loss by storing it in a safe secure environment and enables your research data to be open access. https://researchdata.tees.ac.uk/about.

Deposita Dados

Repositório Comum de Dados de Pesquisa

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The Common Research Data Repository (Deposita Dados) is a database for archiving, publishing, disseminating, preserving and sharing digital research data and its mission is to promote, support and facilitate the adoption of open access to the datasets of Brazilian researchers linked to scientific institutions that do not yet have their own research data repositories and/or of Brazilian researchers who have executed their datasets through scientific collaboration in foreign teaching and research institutions.

Cellular Phenotype database

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The Cellular Phenotype database stores data derived from high-throughput phenotypic studies and it is being developed as part of the Systems Microscopy Network of Excellence project. The aim of the Cellular Phenotype database is to provide easy access to phenotypic data and facilitate the integration of independent phenotypic studies. Through its interface, users can search for a gene of interest, or a collection of genes, and retrieve the loss-of-function phenotypes observed, in human cells, by suppressing the expression of the selected gene(s), through RNA interference (RNAi), across independent phenotypic studies. Similarly, users can search for a phenotype of interest and retrieve the RNAi reagents that have caused such phenotype and the associated target genes. Information about specific RNAi reagents can also be obtained when searching for a reagent ID.

ASAP

A systematic annotation package for community analysis of genomes

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ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and gene expression data collected by or in collaboration with researchers at the University of Wisconsin - Madison. ASAP was designed to facilitate ongoing community annotation of genomes and to grow with genome projects as they move from the preliminary data stage through post-sequencing functional analysis. The ASAP database includes multiple genome sequences at various stages of analysis, and gene expression data from preliminary experiments.

GeneWeaver.org

The Ontological Discovery Environment

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GeneWeaver combines cross-species data and gene entity integration, scalable hierarchical analysis of user data with a community-built and curated data archive of gene sets and gene networks, and tools for data driven comparison of user-defined biological, behavioral and disease concepts. Gene Weaver allows users to integrate gene sets across species, tissue and experimental platform. It differs from conventional gene set over-representation analysis tools in that it allows users to evaluate intersections among all combinations of a collection of gene sets, including, but not limited to annotations to controlled vocabularies. There are numerous applications of this approach. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users.

Canadian Open Neuroscience Platform Portal

CONP

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The CONP portal is a web interface for the Canadian Open Neuroscience Platform (CONP) to facilitate open science in the neuroscience community. CONP simplifies global researcher access and sharing of datasets and tools. The portal internalizes the cycle of a typical research project: starting with data acquisition, followed by processing using already existing/published tools, and ultimately publication of the obtained results including a link to the original dataset. From more information on CONP, please visit https://conp.ca

InTOR - Electronic Repository of Research and Scientific Papers

InTOR - Repository of the Institute “Torlak”

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InTOR is the institutional digital repository of the Institute of Virology, Vaccines and Sera “Torlak”. It provides open access to publications and other research outputs resulting from the projects implemented by the Institute of Virology, Vaccines and Sera “Torlak”. The software platform of the repository is adapted to the modern standards applied in the dissemination of scientific publications and is compatible with international infrastructure in this field.

ResearchGate Data

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ResearchGate is a network where 15+ million scientists and researchers worldwide connect to share their work. Researchers can upload data of any type and receive DOIs, detailed statistics and real-time feedback. In Data discovery Section of ResearchGate you can explore the added datasets.

Arca Dados

Arca Data

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Arca Data is Fiocruz's official repository for archiving, publishing, disseminating, preserving and sharing digital research data produced by the Fiocruz community or in partnership with other research institutes or bodies, with the aim of promoting new research, ensuring the reproducibility or replicability of existing research and promoting an Open and Citizen Science. Its objective is to stimulate the wide circulation of scientific knowledge, strengthening the institutional commitment to Open Science and free access to health information, in addition to providing transparency and fostering collaboration between researchers, educators, academics, managers and graduate students, to the advancement of knowledge and the creation of solutions that meet the demands of society.

HomoMINT

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<<<!!!<<< This repository is no longer available. >>>!!!>>>

European Soil Data Centre

ESDAC

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The European Soil Data Centre (ESDAC) is the thematic centre for soil related data in Europe. Its ambition is to be the single reference point for and to host all relevant soil data and information at European level. It contains a number of resources that are organized and presented in various ways: datasets, services/applications, maps, documents, events, projects and external links.

UniRef

UniProt Reference Clusters

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The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view.

Brunel figshare

Brunel research data repository & registry

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Brunel Figshare (brunel.figshare.com) is a Data Repository where Brunel’s researchers can deposit their digital Research Data, to make it available in a citable, shareable and discoverable manner.

Repozytorium Uniwersytetu Przyrodniczego we Wrocławiu

Repository of Wrocław University of Environmental and Life Sciences

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Base of Knowledge Wrocław University of Environmental and Life Sciences / Research Data Repository is an institutional open research data repository, offering the possibility to deposit datasets (as well as publications) created by researchers, PhD candidates and students of Wrocław University of Environmental and Life Sciences. It is intended for scientific data from the disciplines related to the University’s profile. It is a platform where research data can be safely collected, stored and openly shared with others, obtaining a permanent Digital Object Identifier (DOI) for each dataset and choosing a data usage license. Research Data Repository applies the FAIR Principles (data is findable, accessible, interoperable and reusable).

SimTK

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SimTK is a free project-hosting platform for the biomedical computation community that enables researchers to easily share their software, data, and models and provides the infrastructure so they can support and grow a community around their projects. It has over 126.656 members, hosts 1.648 projects from researchers around the world, and has had more than 2.095.783 files downloaded from it. Individuals have created SimTK projects to meet publisher and funding agencies’ software and data sharing requirements, run scientific challenges, create a collection of their community’s resources, and much more.

NCCOR

National Collaborative on Childhood Obesity Research

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The National Collaborative on Childhood Obesity Research (NCCOR) brings together four of the nation's leading research funders — the Centers for Disease Control and Prevention (CDC), the National Institutes of Health (NIH), the Robert Wood Johnson Foundation (RWJF), and the U.S. Department of Agriculture (USDA) — to address the problem of childhood obesity in America. The Tools of the NCCOR are: Catalogue of Surveillance Systems, Measures Registry and Registry of Studies.