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Found 454 result(s)

Pacific and Regional Archive for Digital Sources in Endangered Cultures

PARADISEC

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PARADISEC (the Pacific And Regional Archive for Digital Sources in Endangered Cultures) offers a facility for digital conservation and access to endangered materials from all over the world. Our research group has developed models to ensure that the archive can provide access to interested communities, and conforms with emerging international standards for digital archiving. We have established a framework for accessioning, cataloguing and digitising audio, text and visual material, and preserving digital copies. The primary focus of this initial stage is safe preservation of material that would otherwise be lost, especially field tapes from the 1950s and 1960s.

CancerData.org

Sharing data for cancer research

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The CancerData site is an effort of the Medical Informatics and Knowledge Engineering team (MIKE for short) of Maastro Clinic, Maastricht, The Netherlands. Our activities in the field of medical image analysis and data modelling are visible in a number of projects we are running. CancerData is offering several datasets. They are grouped in collections and can be public or private. You can search for public datasets in the NBIA (National Biomedical Imaging Archive) image archives without logging in.

Electron Microscopy Public Image Archive

EMPIAR

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EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload, download and reprocess the thousands of raw, 2D images used to build a 3D structure. The purpose of EMPIAR is to provide an easy access to the state-of-the-art raw data to facilitate methods development and validation, which will lead to better 3D structures. It complements the Electron Microscopy Data Bank (EMDB), where 3D images are stored, and uses the fault-tolerant Aspera platform for data transfers

Research Data Repository FDAT

Research Data Repository of the University of Tuebingen

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FDAT is a research data repository hosted by the University of Tübingen, designed to facilitate long-term archiving and publication of research data. Managed by the Information, Communication and Media Center (IKM), it primarily caters to the humanities and social sciences, while welcoming researchers from all scientific disciplines at the university. Committed to high-quality data management, FDAT emphasizes the importance of adhering to the FAIR Data Principles, promoting findability, accessibility, interoperability, and reusability of the research data it contains.

MGnify

formerly: EBI Metagenomics

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MGnify (formerly: EBI Metagenomics) offers an automated pipeline for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.

Ensembl Metazoa

e!EnsemblMetazoa

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Ensembl Metazoa is a genome-centric portal for metazoan species of scientific interest.

IntAct

IntAct Molecular Interaction Database

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IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.

Movebank Data Repository

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This data repository allows users to publish animal tracking datasets that have been uploaded to Movebank (https://www.movebank.org/ ). Published datasets have gone through a submission and review process, and are typically associated with a written study published in an academic journal. All animal tracking data in this repository are available to the public.

UniProtKB

UniProtKnowledgebase

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The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc). The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data. The UniProt Knowledgebase,is an expertly and richly curated protein database, consisting of two sections called UniProtKB/Swiss-Prot and UniProtKB/TrEMBL.

ADS

Arctic Data archive System

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The arctic data archive system (ADS) collects observation data and modeling products obtained by various Japanese research projects and gives researchers to access the results. By centrally managing a wide variety of Arctic observation data, we promote the use of data across multiple disciplines. Researchers use these integrated databases to clarify the mechanisms of environmental change in the atmosphere, ocean, land-surface and cryosphere. That ADS will be provide an opportunity of collaboration between modelers and field scientists, can be expected.

DIGITAL.CSIC

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DIGITAL.CSIC is the institutional repository of the Spanish National Research Council (CSIC). Designed for organising, archiving, preserving and disseminating via open access the scientific output generated as a product of the CSIC research activities by CSIC researchers

Digitale Sammlungen

Digital Collections

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The Digital Collections include digitized manuscripts, prints, music, maps, photographs, newspapers and magazines from the rich holdings of the Bayerische Staatsbibliothek. Almost the entire content (>98%) is available for download for research purposes or via IIIF APIs, including all available OCR data.

Open Forest Data

e-Puszcza

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Podlasie digital repository of natural science data

Global Catalogue of Microorganisms

GCM

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WFCC Global Catalogue of Microorganisms (GCM) is expected to be a robust, reliable and user-friendly system to help culture collections to manage, disseminate and share the information related to their holdings. It also provides a uniform interface for the scientific and industrial communities to access the comprehensive microbial resource information.

BioStudies

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The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database accepts submissions via an online tool, or in a simple tab-delimited format. It also enables authors to submit supplementary information and link to it from the publication.

Bitbucket

Atlassian Bitbucket

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Bitbucket is a web-based version control repository hosting service owned by Atlassian, for source code and development projects that use either Mercurial or Git revision control systems.

BonaRes Repository

Publishing research data from agricultural domain

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The BonaRes Repository stores, manage and publishes soil and agricultural research data from research projects, agricultural long-term field experiments and soil profiles which contribute significantly to the analysis of changes of soil and soil functions over the long term. Research data are described by the metadata following the BonaRes Metadata Schema (DOI: 10.20387/bonares-5pgg-8yrp) which combines international recognized standards for the description of geospatial data (INSPIRE Directive) and research data (DataCite 4.0). Metadata includes AGROVOC keywords. Within the BonaRes Repository research data is provided for free reuse under the CC License and can be discovered by advanced text and map search via a number of criteria.

UP Research Data Repository

formerly: UPSpace

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Research data from University of Pretoria. This data repository facilitates data publishing, sharing and collaboration of academic research, allowing UP to manage and in some cases showcase its data to the wider research community. Previously UPSpace (https://repository.up.ac.za/) was used for both datasets and research outputs. Now UP Research Data Repository is dedicated for datasets.

THEREDA

Thermodynamische Referenz-Datenbasis

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THEREDA (Thermodynamic Reference Database) is a joint project dedicated to the creation of a comprehensive, internally consistent thermodynamic reference database, to be used with suitable codes for the geochemical modeling of aqueous electrolyte solutions up to high concentrations.

PubChem

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Pubchem contains 3 databases. 1. PubChem BioAssay: The PubChem BioAssay Database contains bioactivity screens of chemical substances described in PubChem Substance. It provides searchable descriptions of each bioassay, including descriptions of the conditions and readouts specific to that screening procedure. 2. PubChem Compound: The PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups. 3. PubChem Substance. The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.

Indian Genetic Disease Database

IGDD

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<<<!!!<<< The repository is no longer available. >>>!!!>>> Indian Genetic Disease Database (IGDD) is an initiative of CSIR Indian Institute of Chemical Biology. It is supported by Council of Scientific and Industrial Research (CSIR) and Department of Biotechnology (DBT) of India. The Indian people represent one-sixth of the world population and consists of a ethnically, geographically, and genetically diverse population. In some communities the ratio of genetic disorder is relatively high due to consanguineous marriage practiced in the community. This database has been created to keep track of mutations in the causal genes for genetic diseases common in India and help the physicians, geneticists, and other professionals retrieve and use the information for the benefit of the public. The database includes scientific information about these genetic diseases and disabilities, but also statistical information about these diseases in today's society. Data is categorized by body part affected and then by title of the disease.

Research Compendia

Researchcompendia

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<<<!!!<<< As stated 2017-06-27 The website http://researchcompendia.org is no longer available; repository software is archived on github https://github.com/researchcompendia >>>!!!>>> The ResearchCompendia platform is an attempt to use the web to enhance the reproducibility and verifiability—and thus the reliability—of scientific research. we provide the tools to publish the "actual scholarship" by hosting data, code, and methods in a form that is accessible, trackable, and persistent. Some of our short term goals include: To expand and enhance the platform including adding executability for a greater variety of coding languages and frameworks, and enhancing output presentation. To expand usership and to test the ResearchCompendia model in a number of additional fields, including computational mathematics, statistics, and biostatistics. To pilot integration with existing scholarly platforms, enabling researchers to discover relevant Research Compendia websites when looking at online articles, code repositories, or data archives.

GIN

G-Node Data Infrastructure Services

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The German Neuroinformatics Node's data infrastructure (GIN) services provide a platform for comprehensive and reproducible management and sharing of neuroscience data. Building on well established versioning technology, GIN offers the power of a web based repository management service combined with a distributed file storage. The service addresses the range of research data workflows starting from data analysis on the local workstation to remote collaboration and data publication.

Microstructure Database

CAMS microstructure library

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<<<!!!<<< The repository is no longer available. >>>!!!>>> Here you will find a collection of atomic microstructures that have been built by the atomic modeling community. Feel free to download any of these and use them in your own scientific explorations.The focus of this cyberinfrastructure is to advance the field of atomic-scale modeling of materials by acting as a forum for disseminating new atomistic scale methodologies, educating non-experts and the next generation of computational materials scientists, and serving as a bridge between the atomistic and complementary (electronic structure, mesoscale) modeling communities.

eCrystals

eCrystals - Southampton

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eCrystals - Southampton is the archive for Crystal Structures generated by the Southampton Chemical Crystallography Group and the EPSRC UK National Crystallography Service.