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Found 152 result(s)

DisProt

Database of Protein Disorder

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The Database of Protein Disorder (DisProt) is a curated database that provides information about proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part. DisProt is a community resource annotating protein sequences for intrinsically disorder regions from the literature. It classifies intrinsic disorder based on experimental methods and three ontologies for molecular function, transition and binding partner.

MatrixDB

Extracellular Matrix interactions DataBase

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MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides. MatrixDB takes into account the multimetric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers). MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database. MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009

MultiDark Database

Multimessenger Approach for Dark Matter Detection

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<<<!!!<<< This MultiDark application is now integrated into CosmoSim (https://www.cosmosim.org/ , all data and much more is available there. The old MultiDark server is no longer available. >>>!!!>>> The MultiDark database provides results from cosmological simulations performed within the MultiDark project. This database can be queried by entering SQL statements directly into the Query Form. The access to that form and thus access to the public & private databases is password protected.

Golm Metabolome Database

GMD

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The Golm Metabolome Database (GMD) facilitates the search for and dissemination of reference mass spectra from biologically active metabolites quantified using gas chromatography (GC) coupled to mass spectrometry (MS)

Ensembl Plants

e!EnsemblPlants

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EnsemblPlants is a genome-centric portal for plant species. Ensembl Plants is developed in coordination with other plant genomics and bioinformatics groups via the EBI's role in the transPLANT consortium.

Natural History Museum, Data Portal

Explore and download the Natural History Museum’s research and collections data

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The Museum is committed to open access and open science, and has launched the Data Portal to make its research and collections datasets available online. It allows anyone to explore, download and reuse the data for their own research. Our natural history collection is one of the most important in the world, documenting 4.5 billion years of life, the Earth and the solar system. Almost all animal, plant, mineral and fossil groups are represented. These datasets will increase exponentially. Under the Museum's ambitious digital collections programme we aim to have 20 million specimens digitised in the next five years.

Open Data by Socrata

Socrata

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>>>!!!<<< This site is going away on April 1, 2021. General access to the site has been disabled and community users will see an error upon login. >>>!!!<<< Socrata’s cloud-based solution allows government organizations to put their data online, make data-driven decisions, operate more efficiently, and share insights with citizens.

D-PLACE

Database of Places, Language, Culture and Environment

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D-PLACE contains cultural, linguistic, environmental and geographic information for over 1400 human ‘societies’. A ‘society’ in D-PLACE represents a group of people in a particular locality, who often share a language and cultural identity. All cultural descriptions are tagged with the date to which they refer and with the ethnographic sources that provided the descriptions. The majority of the cultural descriptions in D-PLACE are based on ethnographic work carried out in the 19th and early-20th centuries (pre-1950).

OEDI

Open Energy Data Initiative

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OEDI is a centralized repository of high-value energy research datasets aggregated from the U.S. Department of Energy’s Programs, Offices, and National Laboratories. Built to enable data discoverability, OEDI facilitates access to a broad network of findings, including the data available in technology-specific catalogs like the Geothermal Data Repository and Marine Hydrokinetic Data Repository.

GEUS Dataverse

Geological Survey of Denmark and Greenland Dataverse

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An open data repository for scientists from the Geological Survey of Denmark and Greenland (GEUS) to share and preserve their research data.

Signaling Pathways Project

SSP

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The goal of the Signaling Pathways Project knowledgebase is to allow bench researchers to routinely ask sophisticated questions of the universe of multi-omics data points generated by the cellular signaling community. SPP is dedicated to helping researchers to make sense of the often overwhelming volume of multi-omics information in the field of cellular signaling.

TriTrypDB

kinetoplastid genomics resource

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TriTrypDB is an integrated genomic and functional genomic database for pathogens of the family Trypanosomatidae, including organisms in both Leishmania and Trypanosoma genera. TriTrypDB and its continued development are possible through the collaborative efforts between EuPathDB, GeneDB and colleagues at the Seattle Biomedical Research Institute (SBRI).

BIGG Database

Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions

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BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. BiGG integrates several published genome-scale metabolic networks into one resource with standard nomenclature which allows components to be compared across different organisms. BiGG can be used to browse model content, visualize metabolic pathway maps, and export SBML files of the models for further analysis by external software packages. Users may follow links from BiGG to several external databases to obtain additional information on genes, proteins, reactions, metabolites and citations of interest.

DrugBank

Open Data Drug & Drug Target Database

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The DrugBank database is a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. The latest release of DrugBank (version 5.1.1, released 2018-07-03) contains 11,881 drug entries including 2,526 approved small molecule drugs, 1,184 approved biotech (protein/peptide) drugs, 129 nutraceuticals and over 5,751 experimental drugs. Additionally, 5,132 non-redundant protein (i.e. drug target/enzyme/transporter/carrier) sequences are linked to these drug entries. Each DrugCard entry contains more than 200 data fields with half of the information being devoted to drug/chemical data and the other half devoted to drug target or protein data.

Boundary Layer Late Afternoon and Sunset Turbulence

BLLAST

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BLLAST is a research programme aimed at exploring the late afternoon transition of the atmospheric boundary layer. The late afternoon period of the diurnal cycle of the boundary layer is poorly understood. This is yet an important transition period that impacts the transport and dillution of water vapour and trace species. The main questions adressed by the project are: - How the turbulence activity fades when heating by the surface decreases? - What is the impact on the transport of chemical species? - How relevant processes can be represented in numerical models? To answer all these questions, a field campaign was carried out during the summer of 2011 (from June 14 to July 8). Many observation systems were then deployed and operated by research teams coming from France and abroad. They were spanning a large spectrum of space and time scales in order to achieve a comprehensive description of the boundary layer processes. The observation strategy consisted in intensifying the operations in the late afternoon with tethered balloons, resarch aircrafts and UAVs.

University of Warsaw Research Data Repository

Dane Badawcze Uniwersytetu Warszawskiego. Repozytorium

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University of Warsaw Research Data Repository aims to collect, archive, preserve and make available all types of research data. Storing and making data available is possible for users affiliated with the University of Warsaw, Poland, or those involved in projects carried out in partnership with the University of Warsaw. Browsing and downloading publicly available research data is open to all interested.

MorphoSource

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MorphoSource is a data repository specialized for 3D representing physical objects used in research in education (e.g., from museum or laboratory collections). It allows researchers and museum collection staff to store and organize, share, and distribute their own 3d data. Furthermore any registered user can immediately search for and download 3d morphological data sets that have been made accessible through the consent of data authors.

MG-RAST

Metagenomics analysis server

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The MG-RAST server is an open source system for annotation and comparative analysis of metagenomes. Users can upload raw sequence data in fasta format; the sequences will be normalized and processed and summaries automatically generated. The server provides several methods to access the different data types, including phylogenetic and metabolic reconstructions, and the ability to compare the metabolism and annotations of one or more metagenomes and genomes. In addition, the server offers a comprehensive search capability. Access to the data is password protected, and all data generated by the automated pipeline is available for download in a variety of common formats. MG-RAST has become an unofficial repository for metagenomic data, providing a means to make your data public so that it is available for download and viewing of the analysis without registration, as well as a static link that you can use in publications. It also requires that you include experimental metadata about your sample when it is made public to increase the usefulness to the community.

Environmental data explorer

EDE

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<<<!!!<<< This repository is no longer available. Resource Unavailable The requested url (http://geodata.grid.unep.ch/) no longer exists, please contact info@unepgrid.ch for further information.. >>>!!!>>>

Mechanism and Catalytic Site Atlas

CSA (formerly)

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M-CSA is a database of enzyme reaction mechanisms. It provides annotation on the protein, catalytic residues, cofactors, and the reaction mechanisms of hundreds of enzymes. There are two kinds of entries in M-CSA. 'Detailed mechanism' entries are more complete and show the individual chemical steps of the mechanism as schemes with electron flow arrows. 'Catalytic Site' entries annotate the catalytic residues necessary for the reaction, but do not show the mechanism. The M-CSA (Mechanism and Catalytic Site Atlas) represents a unified resource that combines the data in both MACiE and the CSA

RCSB Protein Data Bank

RCSB PDB

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The Protein Data Bank (PDB) archive is the single worldwide repository of information about the 3D structures of large biological molecules, including proteins and nucleic acids. These are the molecules of life that are found in all organisms including bacteria, yeast, plants, flies, other animals, and humans. Understanding the shape of a molecule helps to understand how it works. This knowledge can be used to help deduce a structure's role in human health and disease, and in drug development. The structures in the archive range from tiny proteins and bits of DNA to complex molecular machines like the ribosome.

LAADS DAAC

LAADS web

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LAADS DAAC is the web interface to the Level 1 and Atmosphere Archive and Distribution System (LAADS). The mission of LAADS is to provide quick and easy access to MODIS Level 1, Atmosphere and Land data products, VIIRS Level 1 and Land data products MAS and MERIS data products. MODIS (or Moderate Resolution Imaging Spectroradiometer) is a key instrument aboard the Terra (EOS AM) and Aqua (EOS PM) satellites.

Protected Planet

World Database on Protected Areas

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Protectedplanet.net combines crowd sourcing and authoritative sources to enrich and provide data for protected areas around the world. Data are provided in partnership with the World Database on Protected Areas (WDPA). The data include the location, designation type, status year, and size of the protected areas, as well as species information.

Geochron

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Geochron is a global database that hosts geochronologic and thermochronologic information from detrital minerals. Information included with each sample consists of a table with the essential isotopic information and ages, a table with basic geologic metadata (e.g., location, collector, publication, etc.), a Pb/U Concordia diagram, and a relative age probability diagram. This information can be accessed and viewed with any web browser, and depending on the level of access desired, can be designated as either private or public. Loading information into Geochron requires the use of U-Pb_Redux, a Java-based program that also provides enhanced capabilities for data reduction, plotting, and analysis. Instructions are provided for three different levels of interaction with Geochron: 1. Accessing samples that are already in the Geochron database. 2. Preparation of information for new samples, and then transfer to Arizona LaserChron Center personnel for uploading to Geochron. 3. Preparation of information and uploading to Geochron using U-Pb_Redux.

Radiation Belt Storm Probes Ion Composition Experiment

RBSPICE

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Originally named the Radiation Belt Storm Probes (RBSP), the mission was re-named the Van Allen Probes, following successful launch and commissioning. For simplicity and continuity, the RBSP short-form has been retained for existing documentation, file naming, and data product identification purposes. The RBSPICE investigation including the RBSPICE Instrument SOC maintains compliance with requirements levied in all applicable mission control documents.