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Found 109 result(s)

Global Health Data Exchange

GHDx

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The GHDx is our user-friendly and searchable data catalog for global health, demographic, and other health-related datasets. It provides detailed information about datasets ranging from censuses and surveys to health records and vital statistics, globally. It also serves as a platform for data owners to share their data with the public. The GDB Compare visualization, which allows the user to see rate of change in disease incidence, globally or by country, by age or across all ages, is especially powerful as a tool. Be sure to try adding a bottom chart, like the map, to augment the treemap that loads by default in the top chart.

Ocean Biodiversity Information System

OBIS

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OBIS strives to document the ocean's diversity, distribution and abundance of life. Created by the Census of Marine Life, OBIS is now part of the Intergovernmental Oceanographic Commission (IOC) of UNESCO, under its International Oceanographic Data and Information Exchange (IODE) programme

Swiss National Data and Service Center for the Humanities

DaSCH

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DaSCH is the trusted platform and partner for open research data in the Humanities. DaSCH develops and operates a FAIR long-term repository and a generic virtual research environment for open research data in the humanities in Switzerland. We provide long-term direct access to the data, enable their continuous editing and allow for precise citation of single objects within a dataset. We ensure interoperability with tools used by the Humanities and Cultural Sciences communities and foster the use of standards. The development of our platform happens in close cooperation with these communities. We provide training and advice in the area of research data management, promote open data and the use of standards. DaSCH is the coordinating institution and representative of Switzerland in the European Research Infrastructure Consortium ‘Digital Research Infrastructure for the Arts and Humanities’ (DARIAH ERIC). Within this mandate, we actively engage in community building within Switzerland and abroad. DaSCH cooperates with national and international organizations and initiatives in order to provide services that are fit for purpose within the broader Swiss open research data landscape and that are coordinated with other institutions such as FORS. We base our actions on the values reliability, flexibility, appreciation, curiosity, and persistence. Furthermore, DARIAH’s activities in Switzerland are coordinated by DaSCH and DaSCH is acting as DARIAH-CH Coordination Office.

EMEP

The European Monitoring and Evaluation Programme

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The European Monitoring and Evaluation Programme (EMEP) is a scientifically based and policy driven programme under the Convention on Long-range Transboundary Air Pollution (CLRTAP) for international co-operation to solve transboundary air pollution problems.

PMN

Plant Metabolic Network

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The Plant Metabolic Network (PMN) provides a broad network of plant metabolic pathway databases that contain curated information from the literature and computational analyses about the genes, enzymes, compounds, reactions, and pathways involved in primary and secondary metabolism in plants. The PMN currently houses one multi-species reference database called PlantCyc and 22 species/taxon-specific databases.

prometheus

Das verteilte digitale Bildarchiv für Forschung & Lehre

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prometheus is a digital image archive for Art and Cultural Sciences. prometheus enables the convenient search for images on a common user interface within different image archives, variable databases from institutes, research facilities and museums.

ICOS Carbon Portal

Integrated Carbon Observation System

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ICOS Carbon Portal is the data portal of the Integrated Carbon Observation System. It provides observational data from the state of the carbon cycle in Europe and the world. The Carbon Portal is the data center of the ICOS infrastructure. ICOS will collect greenhouse gas concentration and fluxes observations from three separate networks, all these observations are carried out to support research to help us understand how the Earth’s greenhouse gas balance works, because there are still many and large uncertainties!

Magnetics Information Consortium

MagIC

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The Magnetics Information Consortium (MagIC) improves research capacity in the Earth and Ocean sciences by maintaining an open community digital data archive for rock magnetic, geomagnetic, archeomagnetic (archaeomagnetic) and paleomagnetic (palaeomagnetic) data. Different parts of the website allow users access to archive, search, visualize, and download these data. MagIC supports the international rock magnetism, geomagnetism, archeomagnetism (archaeomagnetism), and paleomagnetism (palaeomagnetism) research and endeavors to bring data out of private archives, making them accessible to all and (re-)useable for new, creative, collaborative scientific and educational activities. The data in MagIC is used for many types of studies including tectonic plate reconstructions, geomagnetic field models, paleomagnetic field reversal studies, magnetohydrodynamical studies of the Earth's core, magnetostratigraphy, and archeology. MagIC is a domain-specific data repository and directed by PIs who are both producers and consumers of rock, geo, and paleomagnetic data. Funded by NSF since 2003, MagIC forms a major part of https://earthref.org which integrates four independent cyber-initiatives rooted in various parts of the Earth, Ocean and Life sciences and education.

NEEShub

a platform for research, collaboration and education

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<<<!!!<<< As stated 2017-08-28 NEEShub is no longer available. The NEES published projects from the Project Warehouse can be found in the DesignSafe Data Depot https://www.designsafe-ci.org/data/browser/public/nees.public/. The NEES Databases https://datacenterhub.org/resources/395 are being transitioned to DataHub https://datacenterhub.org/ . Please visit DesignSafe https://www.designsafe-ci.org/ for all other inquiries. >>>!!!<<< NEES network features 14 geographically-distributed, shared-use laboratories that support several types of experimental work: geotechnical centrifuge research, shake table tests, large-scale structural testing, tsunami wave basin experiments, and field site research >>>!!!>>>

Freshwater Research and Environmental Database

FRED

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The Freshwater Research and Environmental Database is the central data repository for IGB. It is where we store and share environmental data from observations of lakes, rivers, peatlands and other freshwater habitats. In FRED you can find continuous data collected over several decades from our long-term research programme at the lakes Müggelsee, Stechlinsee, Arendsee and the river Spree, as well as environmental data derived from short-term projects in aquatic ecosystems. All data include detailed metadata descriptions in text form to allow reuse of the data. The database can be searched for a range of aspects, such as ecosystem types or abiotic and biotic variables. Data use, where not freely accessible, shall be granted after consulting with the contact person given in the database, and is subject to the IGB Data Policy.

TU Wien Research Data

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TU Wien Research Data is an institutional repository of TU Wien to enable storing, sharing and publishing of digital objects, in particular research data. It facilitates the funders' requirements for open access to research data and the FAIR principles by making research output findable, accessible, interoperable, and reusable. A DOI is assigned to each dataset published in TU Wien Research Data. This service is developed by the TU Wien Center for Research Data Management and hosted by TU.it.

Electron Microscopy Public Image Archive

EMPIAR

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EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload, download and reprocess the thousands of raw, 2D images used to build a 3D structure. The purpose of EMPIAR is to provide an easy access to the state-of-the-art raw data to facilitate methods development and validation, which will lead to better 3D structures. It complements the Electron Microscopy Data Bank (EMDB), where 3D images are stored, and uses the fault-tolerant Aspera platform for data transfers

MGnify

formerly: EBI Metagenomics

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MGnify (formerly: EBI Metagenomics) offers an automated pipeline for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.

Barbara A. Mikulski Archive for Space Telescopes

MAST

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The Mikulski Archive for Space Telescopes (MAST) is a NASA funded project to support and provide to the astronomical community a variety of astronomical data archives, with the primary focus on scientifically related data sets in the optical, ultraviolet, and near-infrared parts of the spectrum. MAST is located at the Space Telescope Science Institute (STScI).

Comprehensive Antibiotic Resistance Database

CARD

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A bioinformatic database of antimicrobial resistance genes, their products and associated phenotypes.

Inspire-HEP

Inspire-High Energy Physics

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CERN, DESY, Fermilab and SLAC have built the next-generation High Energy Physics (HEP) information system, INSPIRE. It combines the successful SPIRES database content, curated at DESY, Fermilab and SLAC, with the Invenio digital library technology developed at CERN. INSPIRE is run by a collaboration of CERN, DESY, Fermilab, IHEP, IN2P3 and SLAC, and interacts closely with HEP publishers, arXiv.org, NASA-ADS, PDG, HEPDATA and other information resources. INSPIRE represents a natural evolution of scholarly communication, built on successful community-based information systems, and provides a vision for information management in other fields of science.

GEOFON

GEOFOrschungsNetz

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GEOFON seeks to facilitate cooperation in seismological research and earthquake and tsunami hazard mitigation by providing rapid transnational access to seismological data and source parameters of large earthquakes, and keeping these data accessible in the long term. It pursues these aims by operating and maintaining a global network of permanent broadband stations in cooperation with local partners, facilitating real time access to data from this network and those of many partner networks and plate boundary observatories, providing a permanent and secure archive for seismological data. It also archives and makes accessible data from temporary experiments carried out by scientists at German universities and institutions, thereby fostering cooperation and encouraging the full exploitation of all acquired data and serving as the permanent archive for the Geophysical Instrument Pool at Potsdam (GIPP). It also organises the data exchange of real-time and archived data with partner institutions and international centres.

Madrigal Database

Cedar Madrigal

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The OpenMadrigal project seeks to develop and support an on-line database for geospace data. The project has been led by MIT Haystack Observatory since 1980, but now has active support from Jicamarca Observatory and other community members. Madrigal is a robust, World Wide Web based system capable of managing and serving archival and real-time data, in a variety of formats, from a wide range of ground-based instruments. Madrigal is installed at a number of sites around the world. Data at each Madrigal site is locally controlled and can be updated at any time, but shared metadata between Madrigal sites allow searching of all Madrigal sites at once from any Madrigal site. Data is local; metadata is shared.

OLOS

Long-term preservation and publication of research data at the level of Switzerland

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OLOS is a Swiss-based data management portal tailored for researchers and institutions. Powerful yet easy to use, OLOS works with most tools and formats across all scientific disciplines to help researchers safely manage, publish and preserve their data. The solution was developed as part of a larger project focusing on Data Life Cycle Management (dlcm.ch) that aims to develop various services for research data management. Thanks to its highly modular architecture, OLOS can be adapted both to small institutions that need a "turnkey" solution and to larger ones that can rely on OLOS to complement what they have already implemented. OLOS is compatible with all formats in use in the different scientific disciplines and is based on modern technology that interconnects with researchers' environments (such as Electronic Laboratory Notebooks or Laboratory Information Management Systems).

GIN

G-Node Data Infrastructure Services

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The German Neuroinformatics Node's data infrastructure (GIN) services provide a platform for comprehensive and reproducible management and sharing of neuroscience data. Building on well established versioning technology, GIN offers the power of a web based repository management service combined with a distributed file storage. The service addresses the range of research data workflows starting from data analysis on the local workstation to remote collaboration and data publication.

DOE Joint Genome Institute Genome Portal

US Department of Energy Joint Genome Institute Genome Web Portal

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The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web. The JGI Genome Portal provides a unified access point to all JGI genomic databases and analytical tools. A user can find all DOE JGI sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms. Databases: Genome Online Database (GOLD), Integrated Microbial Genomes (IGM), MycoCosm, Phytozome

eagle-i

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<<<!!!<<< The repository is no longer available. >>>!!!>>>

Tree of Life Web Project

ToL

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The Tree of Life Web Project is a collection of information about biodiversity compiled collaboratively by hundreds of expert and amateur contributors. Its goal is to contain a page with pictures, text, and other information for every species and for each group of organisms, living or extinct. Connections between Tree of Life web pages follow phylogenetic branching patterns between groups of organisms, so visitors can browse the hierarchy of life and learn about phylogeny and evolution as well as the characteristics of individual groups.

MyTardis

Tardis

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MyTardis began at Monash University to solve the problem of users needing to store large datasets and share them with collaborators online. Its particular focus is on integration with scientific instruments, instrument facilities and research lab file storage. Our belief is that the less effort a researcher has to expend safely storing data, the more likely they are to do so. This approach has flourished with MyTardis capturing data from areas such as protein crystallography, electron microscopy, medical imaging and proteomics and with deployments at Australian institutions such as University of Queensland, RMIT, University of Sydney and the Australian Synchrotron. Data access via https://www.massive.org.au/ and https://store.erc.monash.edu.au/experiment/view/104/ and see 'remarks'.

AceView

AceView genes

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AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release. Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm. In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.