Repository details
DOE Joint Genome Institute Genome Portal
Name of repository
DOE Joint Genome Institute Genome Portal
Additional name(s)
- US Department of Energy Joint Genome Institute Genome Web Portal
- JGI Genome Portal
Repository URL
Subject(s)
Description
The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web. The JGI Genome Portal provides a unified access point to all JGI genomic databases and analytical tools. A user can find all DOE JGI sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms.
Databases: Genome Online Database (GOLD), Integrated Microbial Genomes (IGM), MycoCosm, Phytozome
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- serviceProvider
- dataProvider
Dates
Started
1997
Institutions (3)
Additional name(s)
- DOE JGI
Country
Type(s) of responsibility
- general
- technical
- funding
Type of institution
non-profit
Start date of responsibility
1997
Additional name(s)
- DOE
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
1997
Additional name(s)
- UCOP
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Start date of responsibility
1997
Policies (2)
Policy name
Policy name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
restricted
Data access restriction type(s)
- registration
Data licenses (1)
Data license
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- registration
Data upload license (1)
Data upload license name
Persistent identifier system(s)
- none
Name of the repository software
- other
Versioning
yes
Data citation guideline
Quality management
yes
Application programming interfaces (2)
Type
FTP
Url
Type
SWORD
Url
Metadata standards (1)
Metadata standard
Remarks
Remarks
DOE Joint Genome Institute Genome Web Portal is covered by Clarivate Data Citation Index. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) was created in 1997 to unite the expertise and resources in DNA sequencing, informatics, and technology development pioneered at the U.S. Department of Energy (DOE) genome centers at Lawrence Berkeley National Laboratory (LBNL), Lawrence Livermore National Laboratory (LLNL), and Los Alamos National Laboratory (LANL). In 1999, to accelerate the completion of DOE’s commitment to the Human Genome Project, the University of California, which manages the DOE JGI lead laboratory in LBNL, leased laboratory and office space in a light industrial park in Walnut Creek, California, to consolidate activities
Entry date
2012-08-08
Last update
2026-01-27
Cite this re3data.org record:
re3data.org: DOE Joint Genome Institute Genome Portal; editing status 2026-01-27; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R35K53 last accessed: 2026-02-24-
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- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2026-02-24
