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Found 20 result(s)

Marine Environmental Data Section

MEDS

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As the national oceanographic data centre for Canada, MEDS maintains centralized repositories of some oceanographic data types collected in Canada, and coordinates data exchanges between DFO and recognized intergovernmental organizations, as well as acts as a central point for oceanographic data requests. Real-time, near real-time (for operational oceanography) or historical data are made available as appropriate.

FungiDB

The Fungal and Oomycete Genomics Resource

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FungiDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB was first released in early 2011 as a collaborative project between EuPathDB and the group of Jason Stajich (University of California, Riverside). At the end of 2015, FungiDB was integrated into the EuPathDB bioinformatic resource center. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining.

HALO database

High Altitude and LOng Range database

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HALO-DB is the web platform of a data retrieval and long-term archive system. The system was established to hold and to manage a wide range of data based on observations of the HALO research aircraft and data which are related to HALO observations. HALO (High-Altitude and LOng-range aircraft) is the new German research aircraft (German Science Community (DFG)). The aircraft, a Gulfstream GV-550 Business-Jet, is strongly modified for the application as a research platform. HALO offers several advantages for scientific campaigns, such as its high range of more than 10000 km, a high maximum altitude of more than 15 km, as well as a relatively high payload.

Norwegian Marine Data Center

Norsk marint datasenter

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The Norwegian Marine Data Centre (NMD) at the Institute of Marine Research was established as a national data centre dedicated to the professional processing and long-term storage of marine environmental and fisheries data and production of data products. The Institute of Marine Research continuously collects large amounts of data from all Norwegian seas. Data are collected using vessels, observation buoys, manual measurements, gliders – amongst others. NMD maintains the largest collection of marine environmental and fisheries data in Norway.

Cell Centered Database

CCDB

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>>> !!!!! The Cell Centered Database is no longer on serice. It has been merged with "Cell image library": https://www.re3data.org/repository/r3d100000023 !!!!! <<<<

Cancer GenomeAtlas Data Portal

Cancer Genome Atlas Data Portal

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The Cancer Genome Atlas (TCGA) Data Portal provides a platform for researchers to search, download, and analyze data sets generated by TCGA. It contains clinical information, genomic characterization data, and high level sequence analysis of the tumor genomes. The Data Coordinating Center (DCC) is the central provider of TCGA data. The DCC standardizes data formats and validates submitted data.

Centre for Environmental Data Analysis

CEDA

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The Centre for Environmental Data Analysis (CEDA) serves the environmental science community through managing data centres, data analysis environments, and participation in a host of relevant research projects. We aim to support environmental science, further environmental data archival practices, and develop and deploy new technologies to enhance access to data. Additionally we provide services to aid large scale data analysis. The CEDA Archive operates the atmospheric and earth observation data centre functions on behalf of NERC for the UK atmospheric science and earth observation communities. It covers climate, composition, observations and NWP data as well as various earth observation datasets, including airborne and satellite data and imagery. Prior to November 2016 these functions were operted by CEDA under the titles of the British Atmospheric Data Centre (BADC) and the NERC Earth Observation Data Centre (NEODC). CEDA also operates the UK Solar System Data Centre (UKSSDC), which curates and provides access to archives of data from the upper atmosphere, ionosphere and Earth's solar environment.

ROSA P

NTL Repository

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ROSA P is the United States Department of Transportation (US DOT) National Transportation Library's (NTL) Repository and Open Science Access Portal (ROSA P). The name ROSA P was chosen to honor the role public transportation played in the civil rights movement, along with one of the important figures, Rosa Parks. To meet the requirements outlined in its legislative mandate, NTL collects research and resources across all modes of transportation and related disciplines, with specific focus on research, data, statistics, and information produced by USDOT, state DOTs, and other transportation organizations. Content types found in ROSA P include textual works, datasets, still image works, moving image works, other multimedia, and maps. These resources have value to federal, state, and local transportation decision makers, transportation analysts, and researchers.

The Paleobiology Database

PaleoDB

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The Paleobiology Database (PaleoBioDB) is a non-governmental, non-profit public resource for paleontological data. It has been organized and operated by a multi-disciplinary, multi-institutional, international group of paleobiological researchers. Its purpose is to provide global, collection-based occurrence and taxonomic data for organisms of all geological ages, as well data services to allow easy access to data for independent development of analytical tools, visualization software, and applications of all types. The Database’s broader goal is to encourage and enable data-driven collaborative efforts that address large-scale paleobiological questions.

GabiPD

GABI Primary Database

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GABI, acronym for "Genomanalyse im biologischen System Pflanze", is the name of a large collaborative network of different plant genomic research projects. Plant data from different ‘omics’ fronts representing more than 10 different model or crop species are integrated in GabiPD.

The Cancer Imaging Archive

TCIA

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TCIA is a service which de-identifies and hosts a large archive of medical images of cancer accessible for public download. The data are organized as “collections”; typically patients’ imaging related by a common disease (e.g. lung cancer), image modality or type (MRI, CT, digital histopathology, etc) or research focus. Supporting data related to the images such as patient outcomes, treatment details, genomics and expert analyses are also provided when available.

EarthChem Library

EarthChem

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>>>!!!<<< duplicate >>>!!!<<< see https://www.re3data.org/repository/r3d100011538

HyMeX

HYdrological cycle in the Mediterranean EXperiemnt

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HYdrological cycle in the Mediterranean EXperiemnt. Considering the science and societal issues motivating HyMeX, the programme aims to : improve our understanding of the water cycle, with emphasis on extreme events, by monitoring and modelling the Mediterranean atmosphere-land-ocean coupled system, its variability from the event to the seasonal and interannual scales, and its characteristics over one decade (2010-2020) in the context of global change, assess the social and economic vulnerability to extreme events and adaptation capacity.The multidisciplinary research and the database developed within HyMeX should contribute to: improve observational and modelling systems, especially for coupled systems, better predict extreme events, simulate the long-term water-cycle more accurately, provide guidelines for adaptation measures, especially in the context of global change.

TERENO Data Discovery Portal

Terrestrial Environmental Observatories Data Discovery Portal

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This portal applicaton brings together the data collected and published via OGC Web-services from the individual observatories and provides access of the data to the public. Therefore, it serves as a database node to provide scientists and decision makers with reliable and well accessible data and data products.

Coriolis

Operational Oceanography

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The Coriolis Data Centre handles operational oceanography measurements made in situ, complementing the measurement of the ocean surface made using instruments aboard satellites. This work is realised through the establishment of permanent networks with data collected by ships or autonomous systems that are either fixed or drifting. This data can be used to construct a snapshot of water mass structure and current intensity.

UCSD Metabolomics Workbench

Metabolomics Workbench

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With the creation of the Metabolomics Data Repository managed by Data Repository and Coordination Center (DRCC), the NIH acknowledges the importance of data sharing for metabolomics. Metabolomics represents the systematic study of low molecular weight molecules found in a biological sample, providing a "snapshot" of the current and actual state of the cell or organism at a specific point in time. Thus, the metabolome represents the functional activity of biological systems. As with other ‘omics’, metabolites are conserved across animals, plants and microbial species, facilitating the extrapolation of research findings in laboratory animals to humans. Common technologies for measuring the metabolome include mass spectrometry (MS) and nuclear magnetic resonance spectroscopy (NMR), which can measure hundreds to thousands of unique chemical entities. Data sharing in metabolomics will include primary raw data and the biological and analytical meta-data necessary to interpret these data. Through cooperation between investigators, metabolomics laboratories and data coordinating centers, these data sets should provide a rich resource for the research community to enhance preclinical, clinical and translational research.

LIVIVO

ZB MED Search Portal for Life Sciences

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LIVIVO is an interdisciplinary search engine for literature and information in the field of life sciences. It is run by ZB MED – Information Centre for Life Sciences. LIVIVO automatically searches for the terms you enter in a central index of all the databases. The ZB MED Searchportal already provides a large amount of research data from DataCite data centres (e.g. Beijing Genomics Institute, Natural Environment Research Council) in the field of life sciences. These can be searched directly using the "Documenttype=research data" filter. A further integration of data from life science data repositories is planned.

Rolling Deck to Repository

R2R

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The Rolling Deck to Repository (R2R) Program provides a comprehensive shore-side data management program for a suite of routine underway geophysical, water column, and atmospheric sensor data collected on vessels of the academic research fleet. R2R also ensures data are submitted to the NOAA National Centers for Environmental Information for long-term preservation.

MARGINS Data Portal

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<<<!!!<<< Margin is now Geoprism see: https://www.re3data.org/repository/r3d100010639 >>>!!!>>>

SiB Colombia Portal de Datos

GBIF Colombia

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The Colombian Biodiversity Information Facility (SiB Colombia) is a national initiative established in early 2000 and coordinated by Instituto Humboldt to facilitate free and open access to biodiversity data. It comprises a network of more than 100 organizations (including universities, biological collections, research institutes, environmental authorities and NGOs among others) that work together to ensure that biodiversity data is available to support further research, education, policy making and incentive measures for the conservation and sustainable use of biodiversity. SiB Colombia’s mission is to facilitate the management of biodiversity data by bringing together users, publishers and data producers to support research, education and decision making related to knowledge, conservation and sustainable use of biodiversity and ecosystem services. SiB Colombia aims to consolidate the collaborative platform that facilitates the generation, use and democratization of knowledge on the biodiversity of Colombia. Thus, SiB Colombia contributes to a vision of a society that knows and values the biodiversity in which it is immersed, and uses such knowledge for its development.