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Found 229 result(s)

doRiNA

database of RNA interactions in post-transcriptional regulation

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doRiNA is a database of transcriptome-wide binding site data for RNA binding proteins and microRNAs

Virtual Fly Brain

VFB

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Virtual Fly Brain (VFB) - an interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster CNS.

Kadi4Mat

Kadi4Mat instance KIT+

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Kadi4Mat instance for use at the Karlsruhe Institute of Technology (KIT) and for cooperations, including the Cluster of Competence for Solid-state Batteries (FestBatt), the Battery Competence Cluster Analytics/Quality Assurance (AQua), and more. Kadi4Mat is the Karlsruhe Data Infrastructure for Materials Science, an open source software for managing research data. It is being developed as part of several research projects at the Institute for Applied Materials - Microstructure Modelling and Simulation (IAM-MMS) of the Karlsruhe Institute of Technology (KIT). The goal of this project is to combine the ability to manage and exchange data, the repository , with the possibility to analyze, visualize and transform said data, the electronic lab notebook (ELN). Kadi4Mat supports a close cooperation between experimenters, theorists and simulators, especially in materials science, to enable the acquisition of new knowledge and the development of novel materials. This is made possible by employing a modular and generic architecture, which allows to cover the specific needs of different scientists, each utilizing unique workflows. At the same time, this opens up the possibility of covering other research disciplines as well.

IAGOS Data Centre

In-service Aircraft for a Global Observing System

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IAGOS aims to provide long-term, regular and spatially resolved in situ observations of the atmospheric composition. The observation systems are deployed on a fleet of 10 to 15 commercial aircraft measuring atmospheric chemistry concentrations and meteorological fields. The IAGOS Data Centre manages and gives access to all the data produced within the project.

University of Melbourne data repository

melbourne.figshare.com

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melbourne.figshare.com is a specialised service that has been tailored according to specific needs and requirements of the University and our community of researchers. The service offered at the University is free to use, provides 100GB of data, and stores all data on the University's storage system.

University of Adelaide figshare

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Figshare has been chosen as the University of Adelaide's official data and digital object repository with unlimited local storage. All current staff and HDR students can access and publish research data and digital objects on the University of Adelaide's Figshare site. Because Figshare is cloud-based, you can access it anywhere and at any time.

Universal PBM Resource for Oligonucleotide Binding Evaluation

UniPROBE

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The UniPROBE (Universal PBM Resource for Oligonucleotide Binding Evaluation) database hosts data generated by universal protein binding microarray (PBM) technology on the in vitro DNA binding specificities of proteins. This initial release of the UniPROBE database provides a centralized resource for accessing comprehensive data on the preferences of proteins for all possible sequence variants ('words') of length k ('k-mers'), as well as position weight matrix (PWM) and graphical sequence logo representations of the k-mer data. In total, the database currently hosts DNA binding data for 406 nonredundant proteins from a diverse collection of organisms, including the prokaryote Vibrio harveyi, the eukaryotic malarial parasite Plasmodium falciparum, the parasitic Apicomplexan Cryptosporidium parvum, the yeast Saccharomyces cerevisiae, the worm Caenorhabditis elegans, mouse, and human. The database's web tools (on the right) include a text-based search, a function for assessing motif similarity between user-entered data and database PWMs, and a function for locating putative binding sites along user-entered nucleotide sequences

RELMIN

Le statut légal des minorités religieuses dans l’espace euro-méditerranéen (Vème –XVème siècles)

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RELMIN collects, studies and publishes legal texts defining the status of religious minorities in medieval Europe. The corpus of texts is rich and varied, spanning ten centuries over a broad geographical area; these texts, in Latin, Arabic, Greek, Hebrew and Aramaic (and also in Medieval Spanish, Portuguese, and other European vernaculars), are dispersed in libraries and archives across Europe. The texts are now gathered in the RELMIN Database in their original language, with translations and commentaries. They are made available to scholars, students and citizens at large. Access is unlimited, free and perennial. and to contribute to the work of compilation. RELMIN is is buil ding a digital database of legal, judicial and normative sources defining the status of religious minorities from the 5th to the 15th century.

Animal Genome Tracks on GBrowse

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Genome track alignments using GBrowse on this site are featured with: (1) Annotated and predicted genes and transcripts; (2) QTL / SNP Association tracks; (3) OMIA genes; (4) Various SNP Chip tracks; (5) Other mapping fetures or elements that are available.

NeuroElectro

organizing information on cellular neurophysiology

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The goal of the NeuroElectro Project is to extract information about the electrophysiological properties (e.g. resting membrane potentials and membrane time constants) of diverse neuron types from the existing literature and place it into a centralized database.

TreeGenes

A forest tree genome database

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TreeGenes is a genomic, phenotypic, and environmental data resource for forest tree species. The TreeGenes database and Dendrome project provide custom informatics tools to manage the flood of information.The database contains several curated modules that support the storage of data and provide the foundation for web-based searches and visualization tools. GMOD GUI tools such as CMAP for genetic maps and GBrowse for genome and transcriptome assemblies are implemented here. A sample tracking system, known as the Forest Tree Genetic Stock Center, sits at the forefront of most large-scale projects. Barcode identifiers assigned to the trees during sample collection are maintained in the database to identify an individual through DNA extraction, resequencing, genotyping and phenotyping. DiversiTree, a user-friendly desktop-style interface, queries the TreeGenes database and is designed for bulk retrieval of resequencing data. CartograTree combines geo-referenced individuals with relevant ecological and trait databases in a user-friendly map-based interface. ---- The Conifer Genome Network (CGN) is a virtual nexus for researchers working in conifer genomics. The CGN web site is maintained by the Dendrome Project at the University of California, Davis.

TemplateFlow

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Reference anatomies of the brain and corresponding atlases play a central role in experimental neuroimaging workflows and are the foundation for reporting standardized results. The choice of such references —i.e., templates— and atlases is one relevant source of methodological variability across studies, which has recently been brought to attention as an important challenge to reproducibility in neuroscience. TemplateFlow is a publicly available framework for human and nonhuman brain models. The framework combines an open database with software for access, management, and vetting, allowing scientists to distribute their resources under FAIR —findable, accessible, interoperable, reusable— principles. TemplateFlow supports a multifaceted insight into brains across species, and enables multiverse analyses testing whether results generalize across standard references, scales, and in the long term, species, thereby contributing to increasing the reliability of neuroimaging results.

bio.tools

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bio.tools is a software registry for bioinformatics and the life sciences.

Open Research Data Online

ORDO

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The figshare service for The Open University was launched in 2016 and allows researchers to store, share and publish research data. It helps the research data to be accessible by storing metadata alongside datasets. Additionally, every uploaded item receives a Digital Object Identifier (DOI), which allows the data to be citable and sustainable. If there are any ethical or copyright concerns about publishing a certain dataset, it is possible to publish the metadata associated with the dataset to help discoverability while sharing the data itself via a private channel through manual approval.

ISIDORE

Integration Services, interconnection of Data of the Research and Education

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ISIDORE is a international search engine and a discovery platform for open science allowing the access to digital materials from social sciences and humanities (SSH). Open to all and especially to teachers, researchers, PhD students, and students, it relies on the principles of Web of data and provides access to data in free access (open access). By its vocation, ISIDORE will foster access to open access data produced by research and higher education institutions, laboratories and research teams: digital publication, documentary databases, digitized collections of research libraries, research notebooks and scientific event announcements. ISIDORE collects, enriches and highlights digital data and documents from the Humanities and Social Sciences while providing unified access to them. More information see: https://isidore.science/about

Environment and Climate Change Canada Data Catalogue

Catalogue de données d'Environnement et Changement climatique Canada

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Resources available on ECCC’s Data Catalogue are the same as those on the Open Governmental Portal, although they are meant for ECCC employees to access the information on their departmental platform.

The Plastics-Active Enzymes Database

PAZy

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Plastics are widely used in our economy and each year, at least 350-400 million tons are being produced at a global level. Due to poor recycling and low circular use, tens of millions of tons accumulate annually in marine and terrestrial environments. While it has become obvious that micro and macroplastics contaminate our environments recent research has identified few bacteria and fungi actively degrading plastics by enzymatic reactions. In general these are promiscuous enzymes (hydrolases) acting on low crystaline and mostly low density polymers of PET, ester-based PUR and oligomers of PA. Notably today, no enzymes have been characterized on a biochemical level for polymeric and crystaline PE, ether-based PUR, PS, PVC, PP. While many publications report on plastic degradation often, no convincing biochemical data have been published. Therefore the PAZy database lists exclusively biochemically characterized plastic-active enzymes. Predicted and putative enzymes that were not characterized on a biochemical, functional or structural level are not included in the PAZy database. The entries are manually curated.

BAW-Datenrepository

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The BAW is a research institute for the Federal Ministry of Transport and acts as an advisor to the federal government for issues of waterway engineering. In this role the BAW consumes and produces large volumes of data and information. As part of the implementation of Open Data legislation and in support of Open Data and Open Access principles, the BAW provides access to scientific data together with their metadata. The BAW-Datenrepository was developed as a point of access for hydraulic engineering experts, contractors and customers of the BAW as well as the general public. It is a source for quality-assured information and provides standardised, long-term access to waterway engineering data. The BAW-Datenrepository supports the targeted search for information and data and gives direct access to them. By publishing its scientific data, the BAW promotes transparency in public discourse as well as accountability of public administration enabling the data to create value beyond the BAW.

MIDAS

Nacionalinis atviros prieigos mokslinių tyrimų duomenų archyvas

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MIDAS is a national research data repository. The aim of MIDAS is to collect, process, store and analyse research data and other relevant information in all fields of knowledge, enabling free, easy and convenient access to the data via the Internet. MIDAS provides services for registered and unregistered users: students, listeners, academics, researchers, scientists, research administrators, other actors of the research and studies ecosystem, and all individuals interested in research data. MIDAS consists of the MIDAS portal and MIDAS user account. The MIDAS portal is a public space accessible to anyone interested in discovering and viewing published research Data and their metadata, whereas MIDAS user account is available to registered users only. MIDAS is managed by Vilnius University.

Sextant

Infrastructure de Données Géographiques (IDG) marines et littorales

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Sextant is a marine and coastal geographic data infrastructure. It is operated by Scientific Information Systems for the Sea (SISMER) of Ifremer (https://www.ifremer.fr/). Sextant aims to document, disseminate and promote a catalog of data related to the marine environment. For Ifremer's laboratories and partners, as well as for national and European actors working in the marine and coastal field, Sextant provides tools that promote and facilitate the archiving, consultation and availability of these geographical data. Data published by Sextant are available free or restricted. They can be used in accordance with the terms of the Creative Commons license selected by the author of data. Sextant infrastructure and the technologies used are in line with the implementation of the INSPIRE Directive and make it possible to follow the Open Data approach. Some data set published by Sextant has a DOI which enables it to be cited in a publication in a reliable and sustainable way. The long-term preservation of data filed in Sextant is ensured by Ifremer infrastructure.

Digital Rocks Portal

DRP

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Digital Rocks is a data portal for fast storage and retrieval of images of varied porous micro-structures. It has the purpose of enhancing research resources for modeling/prediction of porous material properties in the fields of Petroleum, Civil and Environmental Engineering as well as Geology. This platform allows managing and preserving available images of porous materials and experiments performed on them, and any accompanying measurements (porosity, capillary pressure, permeability, electrical, NMR and elastic properties, etc.) required for both validation on modeling approaches and the upscaling and building of larger (hydro)geological models. Starting September 2021 we charge fees for publishing larger projects; projects < 2GB remain free: see user agreement https://www.digitalrocksportal.org/user-agreement/

GESIS Data Archive

GESIS Long-term digital preservation

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GESIS preserves (mainly quantitative) social research data to make it available to the scientific research community. The data is described in a standardized way, secured for the long term, provided with a permanent identifier (DOI), and can be easily found and reused through browser-optimized catalogs (https://search.gesis.org/).

St Andrews Research portal - Research Data

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The St Andrews research portal features the research activities within the University of St Andrews.

OEDataRep

INGV - Osservatorio Etneo Open Data repository

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Open Data repository focused on dataset publication by INGV OE - Osservatorio Etneo. The Catania-Osservatorio Etneo Section is a public scientific institution of the National Institute of Geophysics and Volcanology (INGV) which carries out research, monitoring and surveillance activities in the fields of geophysics and volcanology.

Recode

Database of translational recoding events

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<<<!!!<<< This repository is no longer available. >>>!!!>>>