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Found 23 result(s)
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The tree of life links all biodiversity through a shared evolutionary history. This project will produce the first online, comprehensive first-draft tree of all 1.8 million named species, accessible to both the public and scientific communities. Assembly of the tree will incorporate previously-published results, with strong collaborations between computational and empirical biologists to develop, test and improve methods of data synthesis. This initial tree of life will not be static; instead, we will develop tools for scientists to update and revise the tree as new data come in. Early release of the tree and tools will motivate data sharing and facilitate ongoing synthesis of knowledge.
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nanoHUB.org is the premier place for computational nanotechnology research, education, and collaboration. Our site hosts a rapidly growing collection of Simulation Programs for nanoscale phenomena that run in the cloud and are accessible through a web browser. In addition to simulation devices, nanoHUB provides Online Presentations, Courses, Learning Modules, Podcasts, Animations, Teaching Materials, and more. These resources help users learn about our simulation programs and about nanotechnology in general. Our site offers researchers a venue to explore, collaborate, and publish content, as well. Much of these collaborative efforts occur via Workspaces and User groups.
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<<<!!!<<< The repository is no longer available. >>>!!!>>> Selected TOXMAP data can be accesse from the following sites:
U.S. EPA Toxics Release Program (TRI) (https://www.epa.gov/toxics-release-inventory-tri-program)
U.S. EPA Superfund Program (https://www.epa.gov/superfund)
U.S. EPA Facilities Registry System (FRS) (https://www.epa.gov/frs)
U.S. EPA Clean Air Markets Program (https://www.epa.gov/airmarkets)
U.S. EPA Geospatial Applications (https://www.epa.gov/geospatial/epa-geospatial-applications)
U.S. NIH NCI Surveillance, Epidemiology, and End Results Program (SEER) (https://seer.cancer.gov/)
Government of Canada National Pollutant Release Inventory (NPRI) (https://www.canada.ca/en/services/environment/pollution-waste-management/national-pollutant-release-inventory.html)
U.S. Census Bureau (https://www.census.gov/)
U.S. Nuclear Regulatory Commission (NRC) (https://www.nrc.gov/) >>>!!!>>>
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The Cross-National Equivalent File (CNEF) contains population panel data from Australia, Canada, Germany, Great Britain, Korea, Russia, Switzerland and the United States. Each of these countries undertakes a longitudinal household economic survey. The data are made equivalent, providing a reference dataset which cross-links each of the individual studies and allowing cross-national comparisons.
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Phytozome is the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute. Families of related genes representing the modern descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to clade-specific orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.
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<<<!!!<<<This repository is no longer available>>>!!!>>>
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ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and gene expression data collected by or in collaboration with researchers at the University of Wisconsin - Madison.
ASAP was designed to facilitate ongoing community annotation of genomes and to grow with genome projects as they move from the preliminary data stage through post-sequencing functional analysis. The ASAP database includes multiple genome sequences at various stages of analysis, and gene expression data from preliminary experiments.
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Human Protein Reference Database (HPRD) has been established by a team of biologists, bioinformaticists and software engineers. This is a joint project between the PandeyLab at Johns Hopkins University, and Institute of Bioinformatics, Bangalore. HPRD is a definitive repository of human proteins. This database should serve as a ready reckoner for researchers in their quest for drug discovery, identification of disease markers and promote biomedical research in general.
Human Proteinpedia (www.humanproteinpedia.org) is its associated data portal.
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<<<!!!<<< This repository is no longer available. >>>!!!>>>
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GeneWeaver combines cross-species data and gene entity integration, scalable hierarchical analysis of user data with a community-built and curated data archive of gene sets and gene networks, and tools for data driven comparison of user-defined biological, behavioral and disease concepts. Gene Weaver allows users to integrate gene sets across species, tissue and experimental platform. It differs from conventional gene set over-representation analysis tools in that it allows users to evaluate intersections among all combinations of a collection of gene sets, including, but not limited to annotations to controlled vocabularies. There are numerous applications of this approach. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users.
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BrainMaps.org, launched in May 2005, is an interactive multiresolution next-generation brain atlas that is based on over 20 million megapixels of sub-micron resolution, annotated, scanned images of serial sections of both primate and non-primate brains and that is integrated with a high-speed database for querying and retrieving data about brain structure and function over the internet.
Currently featured are complete brain atlas datasets for various species, including Macaca mulatta, Chlorocebus aethiops, Felis catus, Mus musculus, Rattus norvegicus, and Tyto alba.
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The NASA Earth Exchange (NEX) represents a platform for the Earth science community that provides a mechanism for scientific collaboration and knowledge sharing. NEX combines supercomputing, Earth system modeling, workflow management, NASA remote sensing data feeds, and a knowledge sharing platform to deliver a complete work environment in which users can explore and analyze large datasets, run modeling codes, collaborate on new or existing projects, and quickly share results among the Earth Science communities. Includes some local data collections as well as links to data on other sites.
On January 31st, 2019, the NEX portal will be down-scoped; member logins will be suspended and the portal contents transitioned to a static set of archives. New projects and resources will no longer be possible after this occurs.
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RunMyCode is a novel cloud-based platform that enables scientists to openly share the code and data that underlie their research publications. The web service only requires a web browser as all calculations are done on a dedicated cloud computer. Once the results are ready, they are automatically displayed to the user.
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<<<!!!<<< All user content from this site has been deleted. Visit SeedMeLab (https://seedmelab.org/) project as a new option for data hosting. >>>!!!>>>
SeedMe is a result of a decade of onerous experience in preparing and sharing visualization results from supercomputing simulations with many researchers at different geographic locations using different operating systems. It’s been a labor–intensive process, unsupported by useful tools and procedures for sharing information. SeedMe provides a secure and easy-to-use functionality for efficiently and conveniently sharing results that aims to create transformative impact across many scientific domains.
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The UA Campus Repository is an institutional repository that facilitates access to the research, creative works, publications and teaching materials of the University by collecting, sharing and archiving content selected and deposited by faculty, researchers, staff and affiliated contributors.
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In response to emerging pathogens, LabKey launched the Open Research Portal in 2016 to help facilitate collaborative research. It was initially created as a platform for investigators to make Zika research data, commentary and results publicly available in real-time. It now includes other viruses like SARS-CoV-2 where there is a compelling need for real-time data sharing.
Projects are freely available to researchers. If you are interested in sharing real-time data through the portal, please contact LabKey to get started.
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INDI was formed as a next generation FCP effort. INDI aims to provide a model for the broader imaging community while simultaneously creating a public dataset capable of dwarfing those that most groups could obtain individually.
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Databrary is a data library for researchers to share research data and analytical tools with other investigators. It is a web-based repository for open sharing and preservation of video data and associated metadata in the area of behavioral sciences. The project aims to increase the openness in scientific research and dedicated to transforming the culture of science through building a community of researchers empowering them with an unprecedented set of tools for discovery. Databrary is complemented by Datavyu (an open source video-coding software).
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Code Ocean is a cloud-based computational reproducibility platform that provides researchers an easy way to share, discover and run code published in academic journals and conferences.
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SimTK is a free project-hosting platform for the biomedical computation community that enables researchers to easily share their software, data, and models and provides the infrastructure so they can support and grow a community around their projects.
It has over 126.656 members, hosts 1.648 projects from researchers around the world, and has had more than 2.095.783 files downloaded from it. Individuals have created SimTK projects to meet publisher and funding agencies’ software and data sharing requirements, run scientific challenges, create a collection of their community’s resources, and much more.
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The Project on Human Development in Chicago Neighborhoods (PHDCN) is a large-scale, interdisciplinary study of how families, schools, and neighborhoods affect child and adolescent development. It was designed to advance the understanding of the developmental pathways of both positive and negative human social behaviors. In particular, the project examined the causes and pathways of juvenile delinquency, adult crime, substance abuse, and violence. At the same time, the project also provided a detailed look at the environments in which these social behaviors take place by collecting substantial amounts of data about urban Chicago, including its people, institutions, and resources.
Nearly all PHDCN data require an individual application with supporting materials to obtain the data. Applications are handled by the the National Archive of Criminal Justice Data (NACJD). Further instructions will appear on the study home page (linked from search results), where relevant.
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The world’s largest collection of TCR and BCR sequences. Easily incorporate millions of sequences worth of public data into your next papers and projects using immunoSEQ Analyzer. Construct your own projects, draw your own conclusions, and freely publish new discoveries.
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An interactive database hosted by Collaborative Drug Discovery for antibiotic susceptibility data (MIC and IC50). Data is extracted from journal articles and/or contributed by different organizations and individuals. In some cases, the data has not previously been published. Access to the database is open to everyone and can be requested at pewtrusts.org/spark-antibiotic-discovery.
Effective November 18, 2021, Pew transferred all SPARK data to The University of Queensland’s Community for Open Antimicrobial Drug Discovery (CO-ADD). Please visit spark.co-add.org https://co-add.org/.
- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
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Except where otherwise noted, content on this site is licensed under a
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- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-06-22
