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Found 29 result(s)

OPAL

Open At La Trobe

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Open At LaTrobe (OPAL) is La Trobe University’s official repository for Open Access materials generated by academic and professional staff and HDR students. These include publications and other research outputs, theses, open data, and educational resources. OPAL enables the storage, sharing, and selective publication of files and the assignment of a persistent DOI. Users maintain control over who can see their private files and all uploads are stored in La Trobe University approved storage. Access is via La Trobe University login credentials. La Trobe produces a wide range of useful datasets including supplementary data associated with publications and stand-alone datasets and collections.

National Geoscience Data Centre

NGDC

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The BGS is a data-rich organisation with over 400 datasets in its care; including environmental monitoring data, digital databases, physical collections (borehole core, rocks, minerals and fossils), records and archives. Our data is managed by the National Geoscience Data Centre.

Mouse Genome Informatics

MGI

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MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. The projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, MouseMine Project, MouseCyc Project at MGI

PubChem

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Pubchem contains 3 databases. 1. PubChem BioAssay: The PubChem BioAssay Database contains bioactivity screens of chemical substances described in PubChem Substance. It provides searchable descriptions of each bioassay, including descriptions of the conditions and readouts specific to that screening procedure. 2. PubChem Compound: The PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups. 3. PubChem Substance. The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.

Ensembl Plants

e!EnsemblPlants

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EnsemblPlants is a genome-centric portal for plant species. Ensembl Plants is developed in coordination with other plant genomics and bioinformatics groups via the EBI's role in the transPLANT consortium.

Center for Engineering Strong Motion Data

CESMD

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Strong-motion data of engineering and scientific importance from the United States and other seismically active countries are served through the Center for Engineering Strong Motion Data(CESMD). The CESMD now automatically posts strong-motion data from an increasing number of seismic stations in California within a few minutes following an earthquake as an InternetQuick Report(IQR). As appropriate,IQRs are updated by more comprehensive Internet Data Reports that include reviewed versions of the data and maps showing, for example, the finite fault rupture along with the distribution of recording stations. Automated processing of strong-motion data will be extended to post the strong-motion records of the regional seismic networks of the Advanced National Seismic System (ANSS) outside California.

Integrated Marine Observing System Ocean Data Portal

IMOS Ocean Portal

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>>>!!!<<< duplicate >>>!!!<<< see https://www.re3data.org/repository/r3d100010914 At 2016-05-29 sees the official merger of the IMOS eMarine Information Infrastructure (eMII) Facility and the Australian Ocean Data Network (AODN) into a single entity. The marine information Facility of IMOS is now the AODN. Enabling open access to marine data is core business for IMOS. The IMOS data will continue to be discoverable alongside a wider collection of Australian marine and climate data via the new-look AODN Portal. Visit the AODN Portal at https://portal.aodn.org.au/. - All IMOS data is open access and can be discovered, accessed and downloaded via the Australian Ocean Data Network (AODN) Portal.

iDog

Dog Genome SNP Database

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iDog, an integrated resource for domestic dog (Canis lupus familiaris) and wild canids, provides the worldwide dog research community a variety of data services. This includes Genes, Genomes, SNPs, Breed/Disease Traits, Gene Expressions, Single Cell, Dog-Human Homolog Diseases and Literatures. In addition, iDog provides Online tools for performing genomic data visualization and analyses.

PRISM Climate Data

Parameter-elevation Regressions on Independent Slopes Model Climate Data

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The PRISM Climate Group gathers climate observations from a wide range of monitoring networks, applies sophisticated quality control measures, and develops spatial climate datasets to reveal short- and long-term climate patterns. The resulting datasets incorporate a variety of modeling techniques and are available at multiple spatial/temporal resolutions, covering the period from 1895 to the present. Whenever possible, we offer these datasets to the public, either free of charge or for a fee (depending on dataset size/complexity and funding available for the activity).

RCSB Protein Data Bank

RCSB PDB

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The Protein Data Bank (PDB) archive is the single worldwide repository of information about the 3D structures of large biological molecules, including proteins and nucleic acids. These are the molecules of life that are found in all organisms including bacteria, yeast, plants, flies, other animals, and humans. Understanding the shape of a molecule helps to understand how it works. This knowledge can be used to help deduce a structure's role in human health and disease, and in drug development. The structures in the archive range from tiny proteins and bits of DNA to complex molecular machines like the ribosome.

Strasbourg Astronomical Data Center

CDS

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Strasbourg astronomical Data Center (CDS) is dedicated to the collection and worldwide distribution of astronomical data and related information. Alongside data curation and service maintenance responsibilities, the CDS undertakes R&D activities that are fundamental to ensure the long term sustainability in a domain in which technology evolves very quickly. R&D areas include informatics, big data, and development of the astronomical Virtual Observatory (VO). CDS is a major actor in the VO with leading roles in European VO projects, the French Virtual Observatory and the International Virtual Observatory Alliance (IVOA). The CDS hosts the SIMBAD astronomical database, the world reference database for the identification of astronomical objects; VizieR, the catalogue service for the CDS reference collection of astronomical catalogues and tables published in academic journals; and the Aladin interactive software sky atlas for access, visualization and analysis of astronomical images, surveys, catalogues, databases and related data.

Nobeyama Radio Polarimeters

NoRP

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Nobeyama Radio Polarimeters (NoRP) are observing the Sun with multiple frequencies in the microwave range. It is capable to obtain the total coming flux and the circular-polarization degree.

Gene Expression Omnibus

GEO

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Gene Expression Omnibus: a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles.

The CEDA Archive

British Atmospheric Data Centre (formerly)

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The Natural Environment Research Council's Data Repository for Atmospheric Science and Earth Observation. The Centre for Environmental Data Analysis (CEDA) serves the environmental science community through three data centres, data analysis environments, and participation in a host of relevant research projects. We aim to support environmental science, further environmental data archival practices, and develop and deploy new technologies to enhance access to data. Additionally we provide services to aid large scale data analysis.

ProteomeXchange

PX

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The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination. Current members accepting submissions are: The PRIDE PRoteomics IDEntifications database at the European Bioinformatics Institute focusing mainly on shotgun mass spectrometry proteomics data PeptideAtlas/PASSEL focusing on SRM/MRM datasets.

ExAC Browser

Exome Aggregation Consortium Browser

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<<<!!!<<< The ExAC browser is no longer available ExAC data is available in the gnomAD browser https://gnomad.broadinstitute.org/ or for download https://gnomad.broadinstitute.org/downloads#exac-variants. >>>!!!>>>

GDP Drifter Data

Data from Global Drifter Program (GDP)

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Satellite-tracked drifting buoys ("drifters") collect measurements of upper ocean currents and sea surface temperatures (SST) around the world as part of the Global Drifter Program. Drifter locations are estimated from 16-20 satellite fixes per day, per drifter. The Drifter Data Assembly Center (DAC) at NOAA's Atlantic Oceanographic and Meteorological Laboratory (AOML) assembles these raw data, applies quality control procedures, and interpolates them via kriging to regular six-hour intervals. The raw observations and processed data are archived at AOML and at the Marine Environmental Data Services (MEDS) in Canada. Two types of data are available: "metadata" contains deployment location and time, time of drogue (sea anchor) loss, date of final transmission, etc. for each drifter. "Interpolated data" contains the quality-controlled, interpolated drifter observations.

EMDataResource

formerly: EMDataBank

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Cryo electron microscopy enables the determination of 3D structures of macromolecular complexes and cells from 2 to 100 Å resolution. EMDataResource is the unified global portal for one-stop deposition and retrieval of 3DEM density maps, atomic models and associated metadata, and is a joint effort among investigators of the Stanford/SLAC CryoEM Facility and the Research Collaboratory for Structural Bioinformatics (RCSB) at Rutgers, in collaboration with the EMDB team at the European Bioinformatics Institute. EMDataResource also serves as a resource for news, events, software tools, data standards, and validation methods for the 3DEM community. The major goal of the EMDataResource project in the current funding period is to work with the 3DEM community to (1) establish data-validation methods that can be used in the process of structure determination, (2) define the key indicators of a well-determined structure that should accompany every deposition, and (3) implement appropriate validation procedures for maps and map-derived models into a 3DEM validation pipeline.

Nucleic Acid Database

NDB

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The NDB is a resource for nucleic acid research and education. The NDB assembles and distributes information about the three-dimensional structures of nucleic acids through a variety of resources, including a searchable database, Atlas, and software

Protein Data Bank in Europe

PDBe

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PDBe is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - we work to collate, maintain and provide access to the global repository of macromolecular structure data. We develop tools, services and resources to make structure-related data more accessible to the biomedical community.

Astronomical Data Archives Center

ADAC

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The Astronomical Data Archives Center (ADAC) provides access to astronomical data from all over the world with links to online data catalogs, journal archives, imaging services and data archives. Users can access the VizieR catalogue service as well as the Hubble Ultra Deep Field Data by requesting password access. ADAC also provides access to the SMOKA public science data obtained through the Subaru Telescope in Hawaii as well as Schmidt Telescope at the University of Tokyo & MITSuME and KANATA Telescope at Higashi-Hiroshima Observatory. Users may need to contact the ADAC for password access or create user accounts for the various data services accessible through the ADAC site.

National Snow and Ice Data Center

NSIDC

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NSIDC offers hundreds of scientific data sets for research, focusing on the cryosphere and its interactions. Data are from satellites and field observations. All data are free of charge.

Integrated Climate Data Center

ICDC

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The CliSAP-Integrated Climate Data Center (ICDC) allows easy access to climate relevant data from satellite remote sensing and in situ and other measurements in Earth System Sciences. These data are important to determine the status and the changes in the climate system. Additionally some relevant re-analysis data are included, which are modeled on the basis of observational data. ICDC cooperates with the "Zentrum für Nachhaltiges Forschungsdatenmanagement "https://www.fdr.uni-hamburg.de/ to publish observational data with a doi.

Cassavabase

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Breeding, molecular, genetics and genomics data on cassava (Manihot esculenta) and wild relatives

Incorporated Research Institutions for Seismology

IRIS

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IRIS offers free and open access to a comprehensive data store of raw geophysical time-series data collected from a large variety of sensors, courtesy of a vast array of US and International scientific networks, including seismometers (permanent and temporary), tilt and strain meters, infrasound, temperature, atmospheric pressure and gravimeters, to support basic research aimed at imaging the Earth's interior.