Filter
Reset all

Subjects

Content Types

Countries

AID systems

API

Certificates

Data access

Data access restrictions

Database access

Database access restrictions

Database licenses

Data licenses

Data upload

Data upload restrictions

Enhanced publication

Institution responsibility type

Institution type

Keywords

Metadata standards

PID systems

Provider types

Quality management

Repository languages

Software

Syndications

Repository types

Versioning

  • * at the end of a keyword allows wildcard searches
  • " quotes can be used for searching phrases
  • + represents an AND search (default)
  • | represents an OR search
  • - represents a NOT operation
  • ( and ) implies priority
  • ~N after a word specifies the desired edit distance (fuzziness)
  • ~N after a phrase specifies the desired slop amount
  • 1 (current)
Found 23 result(s)

FungiDB

The Fungal and Oomycete Genomics Resource

Subject(s)
Content type(s)
Country
FungiDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB was first released in early 2011 as a collaborative project between EuPathDB and the group of Jason Stajich (University of California, Riverside). At the end of 2015, FungiDB was integrated into the EuPathDB bioinformatic resource center. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining.

Strong Motion Virtual Data Center

Strong Motion VDC

Subject(s)
Content type(s)
Country
The VDC is a public, web-based search engine for accessing worldwide earthquake strong ground motion data. While the primary focus of the VDC is on data of engineering interest, it is also an interactive resource for scientific research and government and emergency response professionals.

PDS

The Planetary Data System

Subject(s)
Content type(s)
Country
The PDS archives and distributes scientific data from NASA planetary missions, astronomical observations, and laboratory measurements. The PDS is sponsored by NASA's Science Mission Directorate. Its purpose is to ensure the long-term usability of NASA data and to stimulate advanced research

The Universal Protein Resource

UniProt

Subject(s)
Content type(s)
Country
The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc).

IMGT/LIGM-DBI

International ImMunoGeneTics information system / Laboratoire d'ImmunoGénétique Moléculaire-Database

Subject(s)
Content type(s)
Country
IMGT/LIGM-DB is a comprehensive database of Immunoglobulins (IG) and T cell Receptors (TR) from human and other vertebrates, with translation for fully annotated sequences.

Mammalian Transcriptomic Database

MTD

Subject(s)
Content type(s)
Country
MTD is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs. Regarding the core features, the MTD browses genes based on their neighboring genomic coordinates or joint KEGG pathway and provides expression information on exons, transcripts, and genes by integrating them into a genome browser. We developed a novel nomenclature for each transcript that considers its genomic position and transcriptional features.

Genome Sequence Archive

GSA

Subject(s)
Content type(s)
Country
GSA is a data repository specialized for archiving raw sequence reads. It supports data generated from a variety of sequencing platforms ranging from Sanger sequencing machines to single-cell sequencing machines and provides data storing and sharing services free of charge for worldwide scientific communities. In addition to raw sequencing data, GSA also accommodates secondary analyzed files in acceptable formats (like BAM, VCF). Its user-friendly web interfaces simplify data entry and submitted data are roughly organized as two parts, viz., Metadata and File, where the former can be further assorted into BioProject, BioSample, Experiment and Run, and the latter contains raw sequence reads.

MediaBank

MGDS MediaBank

Subject(s)
Content type(s)
Country
The MGDS MediaBank contains high quality images, illustrations, animations and video clips that are organized into galleries. Media can be sorted by category, and keyword and map-based search options are provided. Each item in the MediaBank is accompanied by metadata that provides access into our cruise catalog and data repository.

MEMENTO

MarinE MethanE and NiTrous Oxide

Subject(s)
Content type(s)
Country
MEMENTO aims to become a valuable tool for identifying regions of the world ocean that should be targeted in future work to improve the quality of air-sea flux estimates.

Array Express

functional genomics data

Subject(s)
Content type(s)
Country
ArrayExpress is one of the major international repositories for high-throughput functional genomics data from both microarray and high-throughput sequencing studies, many of which are supported by peer-reviewed publications. Data sets are submitted directly to ArrayExpress and curated by a team of specialist biological curators. In the past (until 2018) datasets from the NCBI Gene Expression Omnibus database were imported on a weekly basis. Data is collected to MIAME and MINSEQE standards.

Neuroscience Information Framework

NIF

Subject(s)
Content type(s)
Country
The Neuroscience Information Framework is a dynamic index of data, materials, and tools. Please note, we do not accept direct data deposits, but if you wish to make your data repository or database available through our search, please contact us. An initiative of the NIH Blueprint for Neuroscience Research, NIF advances neuroscience research by enabling discovery and access to public research data and tools worldwide through an open source, networked environment.

Electron Microscopy Data Bank

EMDB

Subject(s)
Content type(s)
Country
The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.

NatureServe

NatureServe network

Subject(s)
Content type(s)
Country
NatureServe and its network of member programs are a leading source for reliable scientific information about species and ecosystems of the Western Hemisphere. This site serves as a portal for accessing several types of publicly available biodiversity data.

Johns Hopkins Turbulence Databases

JHTDB

Subject(s)
Content type(s)
Country
This website is a portal that enables access to multi-Terabyte turbulence databases. The data reside on several nodes and disks on our database cluster computer and are stored in small 3D subcubes. Positions are indexed using a Z-curve for efficient access.

IMGT/GENE-DB

ImMunoGeneTics / Gene-DB

Subject(s)
Content type(s)
Country
IMGT/GENE-DB is the IMGT genome database for IG and TR genes from human, mouse and other vertebrates. IMGT/GENE-DB provides a full characterization of the genes and of their alleles: IMGT gene name and definition, chromosomal localization, number of alleles, and for each allele, the IMGT allele functionality, and the IMGT reference sequences and other sequences from the literature. IMGT/GENE-DB allele reference sequences are available in FASTA format (nucleotide and amino acid sequences with IMGT gaps according to the IMGT unique numbering, or without gaps).

IMGT/mAb-DB

ImMunoGeneTics/MAB-DB

Subject(s)
Content type(s)
Country
IMGT/mAb-DB provides a unique expertised resource on monoclonal antibodies (mAbs) with diagnostic or therapeutic indications, fusion proteins for immune applications (FPIA), composite proteins for clinical applications (CPCA) and relative proteins of the immune system (RPI) with clinical indications.

CancerModels.Org

formerly; Patients-derived tumor xenograft finder

Subject(s)
Content type(s)
Country
Patients-derived tumor xenograft (PDX) mouse models are an important oncology research platform to study tumor evolution, drug response and personalised medicine approaches. We have expanded to organoids and cell lines and are now called CancerModels.Org

Integrated Climate Data Center

ICDC

Subject(s)
Content type(s)
Country
The CliSAP-Integrated Climate Data Center (ICDC) allows easy access to climate relevant data from satellite remote sensing and in situ and other measurements in Earth System Sciences. These data are important to determine the status and the changes in the climate system. Additionally some relevant re-analysis data are included, which are modeled on the basis of observational data. ICDC cooperates with the "Zentrum für Nachhaltiges Forschungsdatenmanagement "https://www.fdr.uni-hamburg.de/ to publish observational data with a doi.

GIGA Research Data

GIGA Metadata Database

Subject(s)
Content type(s)
Country
The GIGA (German Institute of Global and Area Studies) researchers generate a large number of qualitative and quantitative research data. On this page you will find descriptions of this research data ("metadata") as well as information about the available access options. To facilitate its reuse, and to enhance research transparency, a large part of the GIGA research data is published in datorium, a repository hosted by the GESIS Leibniz Institute for the Social Sciences: https://www.re3data.org/repository/r3d100011062 Our objective is to offer free access to as much of our data as possible, to guarantee the possibility of its citation, and to secure its safe storage. Metadata of research data that cannot be published open access due to its sensitivity is also shown on this page.

CottonGen

Cotton Database Resources

Subject(s)
Content type(s)
Country
CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure. CottonGen consolidates and expands the data from CottonDB and the Cotton Marker Database, providing enhanced tools for easy querying, visualizing and downloading research data.

Rolling Deck to Repository

R2R

Subject(s)
Content type(s)
Country
The Rolling Deck to Repository (R2R) Program provides a comprehensive shore-side data management program for a suite of routine underway geophysical, water column, and atmospheric sensor data collected on vessels of the academic research fleet. R2R also ensures data are submitted to the NOAA National Centers for Environmental Information for long-term preservation.

AmphibiaWeb

Subject(s)
Content type(s)
Country
AmphibiaWeb is an online system enabling any user to search and retrieve information relating to amphibian biology and conservation. This site was motivated by the global declines of amphibians, the study of which has been hindered by the lack of multidisplinary studies and a lack of coordination in monitoring, in field studies, and in lab studies. We hope AmphibiaWeb will encourage a shared vision to collaboratively face the challenge of global amphibian declines and the conservation of remaining amphibians and their habitats.

NASA Distributed Active Archive Center at National Snow & Ice Data Center

NASA DAAC at NSIDC

Subject(s)
Content type(s)
Country
The NSIDC Distributed Active Archive Center (DAAC) processes, archives, documents, and distributes data from NASA's past and current Earth Observing System (EOS) satellites and field measurement programs. The NSIDC DAAC focuses on the study of the cryosphere. The NSIDC DAAC is one of NASA's Earth Observing System Data and Information System (EOSDIS) Data Centers.