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Found 6 result(s)

ConsensusPathDB

CPDB

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ConsensusPathDB integrates interaction networks in humans (and in the model organisms - yeast and mouse) including binary and complex protein-protein, genetic, metabolic, signaling, gene regulatory and drug-target interactions, as well as biochemical pathways. Data originate from public resources for interactions and interactions curated from the literature. The interaction data are integrated in a complementary manner to avoid redundancies.

Autism Chromosome Rearrangement Database

ACRD

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The Autism Chromosome Rearrangement Database is a collection of hand curated breakpoints and other genomic features, related to autism, taken from publicly available literature: databases and unpublished data. The database is continuously updated with information from in-house experimental data as well as data from published research studies.

IntAct

IntAct Molecular Interaction Database

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IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.

TextGrid Repository

Virtual research environment for the Humanities

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The TextGrid Repository is a digital preservation archive for human sciences research data. It offers an extensive searchable and adaptable corpus of XML/TEI encoded texts, pictures and databases. Amongst the continuously growing corpus is the Digital Library of TextGrid, which consists of works of more than 600 authors of fiction (prose verse and drama) as well as nonfiction from the beginning of the printing press to the early 20th century written in or translated into German. The files are saved in different output formats (XML, ePub, PDF), published and made searchable. Different tools e.g. viewing or quantitative text-analysis tools can be used for visualization or to further research the text. The TextGrid Repository is part of the virtual research environment TextGrid, which besides offering digital preservation also offers open-source software for collaborative creations and publications of e.g. digital editions that are based on XML/TEI.

Plant and Fungal Carbohydrate Structure Database

PFCSDB

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<<<!!!<<< Bacterial (BCSDB) and Plant&Fungal (PFCSDB) carbohydrate structure databases have been merged into a single database, CSDB >>>!!!>>> This database is aimed at provision of structural, bibliographic, taxonomic and related information on plant and fungal carbohydrate structures. The main source of data is a retrospective literature analysis. About 4000 records were imported from CCSD (Carbbank, University of Georgia, Athens, plus NMR data from corresponding publications; structures published before 1995) with subsequent manual curation and approval. The scope is "plant and fungal carbohydrates" and is expected to cover nearly all structures of this class published until 2013. Plant and fungal means that a structure has been found in plants or fungi or obtained by modification of those found in these domains. Carohydrate means a structure composed of any residues linked by glycosidic, ester, amidic, ketal, phospho- or sulpho-diester bonds, in which at least one residue is a sugar or its derivative.

MatrixDB

Extracellular Matrix interactions DataBase

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MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides. MatrixDB takes into account the multimetric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers). MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database. MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009