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Found 223 result(s)

1000 Genomes

Thousand Genomes

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The 1000 Genomes Project is an international collaboration to produce an extensive public catalog of human genetic variation, including SNPs and structural variants, and their haplotype contexts. This resource will support genome-wide association studies and other medical research studies. The genomes of about 2500 unidentified people from about 25 populations around the world will be sequenced using next-generation sequencing technologies. The results of the study will be freely and publicly accessible to researchers worldwide. The International Genome Sample Resource (IGSR) has been established at EMBL-EBI to continue supporting data generated by the 1000 Genomes Project, supplemented with new data and new analysis.

Academic Seismic Portal at LDEO

ASP at LDEO

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The MGDS Academic Seismic Portal at Lamont-Doherty Earth Observatory (ASP-LDEO), now part of the IEDA Data Facility, was initiated in 2003 to preserve and provide open access to multi-channel seismic (MCS) and single channel seismic (SCS) field data collected for academic research supported by the US National Science Foundation. Multi-channel data are primarily from the marine seismic vessels operated by Lamont-Doherty Earth Observatory of Columbia University. Modern single channel seismic data from other vessels including the R/V Palmer and USCG Healy, as well as data from portable seismic systems, are also served. The development of the Academic Seismic Portal has focused on the need to recover high value MCS data from older surveys as well as to establish sustainable procedures for preservation of data from modern programs. During the final two years of R/V Ewing operations, procedures were established for routine transfer of MCS data along with navigation and acquisition parameters, and other needed documentation to the ASP. Transfer of seismic data and acquisition information is now routine for the National Marine Seismic Facility, the R/V Marcus G. Langseth, which began science operations in February 2008. Data are documented and incorporated into the data system with full access restrictions protecting the scientists' rights to exclusive access during the proprietary hold period. Submission of data to the ASP helps ensure that NSF requirements for data sharing as outlined in the NSF OCE Data Policy are satisfied. Data from the Academic Seismic Portal at UTIG has been migrated to LDEO. As we continue to verify the accuracy and completeness of this data, there may be temporary issues with some seismic metadata and web services.

Academic Seismic Portal at UTIG

ASP

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>>>!!!<<< On June 1, 2020, the Academic Seismic Portal repositories at UTIG were merged into a single collection hosted at Lamont-Doherty Earth Observatory. Content here was removed July 1, 2020. Visit the Academic Seismic Portal @LDEO! https://www.marine-geo.org/collections/#!/collection/Seismic#summary (https://www.re3data.org/repository/r3d100010644) >>>!!!<<<

Academic Torrents

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Academic Torrents is a distributed data repository. The academic torrents network is built for researchers, by researchers. Its distributed peer-to-peer library system automatically replicates your datasets on many servers, so you don't have to worry about managing your own servers or file availability. Everyone who has data becomes a mirror for those data so the system is fault-tolerant.

AceView

AceView genes

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AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release. Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm. In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.

ACTRIS Data Centre

ACTRIS DC

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The ACTRIS DC is designed to assist scientists with discovering and accessing atmospheric data and contains an up-to-date catalogue of available datasets in a number of databases distributed throughout the world. A site like this can never be complete, but we have aimed at including datasets from the most relevant databases to the ACTRIS project, also building on the work and experiences achieved in the EU FP6 research project Global Earth Observation and Monitoring. The focus of the web portal is validated data, but it is also possible to browse the ACTRIS data server for preliminary data (rapid delivery data) through this site. The web site allows you to search in a local metadata catalogue that contains information on actual datasets that are archived in external archives. It is set up so that you can search for data by selecting the chemical/physical variable, the data location, the database that holds the data, the type of data, the data acquisition platform, and the data matrix

Addgene

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Addgene archives and distributes plasmids for researchers around the globe. They are working with thousands of laboratories to assemble a high-quality library of published plasmids for use in research and discovery. By linking plasmids with articles, scientists can always find data related to the materials they request.

AfDB Statistical Data Portal

formerly: Open data for Africa

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The African Development Bank Group (AfDB) is committed to supporting statistical development in Africa as a sound basis for designing and managing effective development policies for reducing poverty on the continent. Reliable and timely data is critical to setting goals and targets as well as evaluating project impact. Reliable data constitutes the single most convincing way of getting the people involved in what their leaders and institutions are doing. It also helps them to get involved in the development process, thus giving them a sense of ownership of the entire development process. The AfDB has a large team of researchers who focus on the production of statistical data on economic and social situations. The data produced by the institution’s statistics department constitutes the background information in the Bank’s flagship development publications. Besides its own publication, the AfDB also finances studies in collaboration with its partners. The Statistics Department aims to stand as the primary source of relevant, reliable and timely data on African development processes, starting with the data generated from its current management of the Africa component of the International Comparison Program (ICP-Africa). The Department discharges its responsibilities through two divisions: The Economic and Social Statistics Division (ESTA1); The Statistical Capacity Building Division (ESTA2)

AgBase

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AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models.

Agency for Healthcare Research and Quality, Data & Surveys

AHRQ data & surveys

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A collection of data at Agency for Healthcare Research and Quality (AHRQ) supporting research that helps people make more informed decisions and improves the quality of health care services. The portal contains U.S.Health Information Knowledgebase (USHIK) and Systematic Review Data Repository (SRDR) and other sources concerning cost, quality, accesibility and evaluation of healthcare and medical insurance.

Alaska Native Language Archive

Michael E. Krauss Alaska Native Language Archive

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The Alaska Native Language Archive houses documentation of the various Native languages of Alaska and helps to preserve and cultivate this unique heritage for future generations. As the premier repository worldwide for information relating to the Native languages of Alaska, the Archive serves researchers, teachers and students, as well as members of the broader community. The collection includes both published and unpublished materials in or on all of the Alaska Native languages and related languages. The collection has enduring cultural, historic, and intellectual value, particularly for Alaska Native language speakers and their descendants

ALEXA

ALEXA-A

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ALEXA is a microarray design platform for 'alternative expression analysis'. This platform facilitates the design of expression arrays for analysis of mRNA isoforms generated from a single locus by the use of alternative transcription initiation, splicing and polyadenylation sites. We use the term 'ALEXA' to describe a collection of novel genomic methods for 'alternative expression' analysis. 'Alternative expression' refers to the identification and quantification of alternative mRNA transcripts produced by alternative transcript initiation, alternative splicing and alternative polyadenylation. This website provides supplementary materials, source code and other downloads for recent publications describing our studies of alternative expression (AE). Most recently we have developed a method, 'ALEXA-Seq' and associated resources for alternative expression analysis by massively parallel RNA sequencing.

AmoebaDB

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AmoebaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. In its first iteration (released in early 2010), AmoebaDB contains the genomes of three Entamoeba species (see below). AmoebaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers . The database includes supplemental bioinformatics analyses and a web interface for data-mining.

Animal QTLdb

Animal Quantitative Trait Loci

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This Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house all publicly available QTL and trait mapping data (i.e. trait and genome location association data; collectively called "QTL data" on this site) on livestock animal species for easily locating and making comparisons within and between species. New database tools are continuely added to align the QTL and association data to other types of genome information, such as annotated genes, RH / SNP markers, and human genome maps. Besides the QTL data from species listed below, the QTLdb is open to house QTL/association date from other animal species where feasible. Note that the JAS along with other journals, now require that new QTL/association data be entered into a QTL database as part of their publication requirements.

Association of Religion Data Archives

ARDA

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The Association of Religion Data Archives (ARDA) strives to democratize access to the best data on religion. Founded as the American Religion Data Archive in 1997 and going online in 1998, the initial archive was targeted at researchers interested in American religion. The targeted audience and the data collection have both greatly expanded since 1998, now including American and international collections and developing features for educators, journalists, religious congregations, and researchers. Data included in the ARDA are submitted by the foremost religion scholars and research centers in the world.

Atlantic Canada Conservation Data Centre

AC CDC

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The Atlantic Canada Conservation Data Centre (ACCDC) maintains comprehensive lists of plant and animal species. The Atlantic CDC has geo-located records of species occurrences and records of extremely rare to uncommon species in the Atlantic region, including New Brunswick, Nova Scotia, Prince Edward Island, Newfoundland, and Labrador. The Atlantic CDC also maintains biological and other types of data in a variety of linked databases.

Atomic and Molecular Data Research Center

AMDRC

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>>> --- !!!! Attention: Obviously the institute does not exist any more. The links do not work anymore. !!!! --- <<< Our center is devoted to: Collection, compilation, evaluation, and dissemination of scientific information required for fusion research, and Investigation of problems arising in the course of development of fusion research. There are atomic and molecular (A & M) numerical databases and bibliographic databases on plasma physics and atomic physics.

Australian Bureau of Meteorology data catalogue

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Meteorology, atmospheric science and oceanography, forecasts, current and historical observations for weather, water, space weather data; data analyses and reports.

Australian SuperSite Network Data Portal

SupeSites Data Portal

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<<<!!!<<< This repository is no longer available. It is part now of TERN Data Discovery Portal https://www.re3data.org/repository/r3d100012013 >>>!!!>>>

Australian Waterbird Surveys

AWS

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Australian Waterbird Surveys (AWS) is an information source of waterbird communities around Australia, based on surveys of their diversity and numbers. It relies on rigorous data collection protocols and includes more than 50 waterbird species and up to 30 years of survey data. This open source also includes the extent of flooding of thousands of wetlands observed during our surveys. As a group, waterbirds can be sentinels of the ecological health of our wetlands and rivers. We hope this free information system will help track long-term changes in the environment, provide an assessment tool for individual species, report on our national and international responsibilities and help improve the way we manage our rivers and wetlands. It has been developed with the support of research and government partners.

BAOBAB

Base Afrique de l'Ouest Beyond AMMA Base

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The projects include airborne, ground-based and ocean measurements, social science surveys, satellite data use, modelling studies and value-added product development. Therefore, the BAOBAB data portal enables to access a great amount and a large variety of data: - 250 local observation datasets, that have been collected by operational networks since 1850, long term monitoring research networks and intensive scientific campaigns; - 1350 outputs of a socio-economics questionnaire; - 60 operational satellite products and several research products; - 10 output sets of meteorological and ocean operational models and 15 of research simulations. Data documentation complies with metadata international standards, and data are delivered into standard formats. The data request interface takes full advantage of the database relational structure and enables users to elaborate multicriteria requests (period, area, property…).

Bedford Institute of Oceanography - Oceanographic Databases

Institut océanographique de Bedford - Bases de données océanographiques

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Databases maintained by Ocean Sciences at the Bedford Institute of Oceanography, including temperature-salinity profiles for the NW Atlantic, sea-surface temperature and chlorophyll from satellite, monthly statistics of ocean currents and other moored instruments, and daily temperature observations from coastal thermographs.

BEI Resource

BEI Resource Repository

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BEI Resources was established by the National Institute of Allergy and Infectious Diseases (NIAID) to provide reagents, tools and information for studying Category A, B, and C priority pathogens, emerging infectious disease agents, non-pathogenic microbes and other microbiological materials of relevance to the research community. BEI Resources acquires authenticates, and produces reagents that scientists need to carry out basic research and develop improved diagnostic tests, vaccines, and therapies. By centralizing these functions within BEI Resources, access to and use of these materials in the scientific community is monitored and quality control of the reagents is assured

Berkeley Drosophila Genome Project

BDGP

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The goals of the Drosophila Genome Center are to finish the sequence of the euchromatic genome of Drosophila melanogaster to high quality and to generate and maintain biological annotations of this sequence. In addition to genomic sequencing, the BDGP is 1) producing gene disruptions using P element-mediated mutagenesis on a scale unprecedented in metazoans; 2) characterizing the sequence and expression of cDNAs; and 3) developing informatics tools that support the experimental process, identify features of DNA sequence, and allow us to present up-to-date information about the annotated sequence to the research community.

Berkeley Drosophila Genome Project insitu

BDGP insitu homepage

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In early 2010 we updated the site to facilitate more rapid transfer of our data to the public database and focus our efforts on the core mission of providing expression pattern images to the research community. The original database https://www.fruitfly.org/index.html reproduced functions available on FlyBase, complicating our updates by the requirement to re-synchronize with FlyBase updates. Our expression reports on the new site still link to FlyBase gene reports, but we no longer reproduce FlyBase functions and therefore can update expression data on an ongoing basis instead of more infrequent major releases. All the functions relating to the expression patterns remain and we soon will add an option to search expression patterns by image similarity, in addition to annotation term searches. In a transitional phase we will leave both the old and the new sites up, but the newer data (post Release 2) will appear only on the new website. We welcome any feedback or requests for additional features. - The goals of the Drosophila Genome Center are to finish the sequence of the euchromatic genome of Drosophila melanogaster to high quality and to generate and maintain biological annotations of this sequence. In addition to genomic sequencing, the BDGP is 1) producing gene disruptions using P element-mediated mutagenesis on a scale unprecedented in metazoans; 2) characterizing the sequence and expression of cDNAs; and 3) developing informatics tools that support the experimental process, identify features of DNA sequence, and allow us to present up-to-date information about the annotated sequence to the research community.