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Found 415 result(s)

1000 Functional Connectomes Project

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The FCP entailed the aggregation and public release (via www.nitrc.org) of over 1200 resting state fMRI (R-fMRI) datasets collected from 33 sites around the world.

ABCD Data Repository

Adolescent Brain Cognitive Development

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The ABCD Data Repository houses all data generated by the Adolescent Brain Cognitive Development (ABCD) Study. The ABCD Study is supported by NIH partners (the National Institute on Drug Abuse, the National Institute on Alcohol Abuse and Alcoholism, the National Cancer Institute, the Eunice Kennedy Shriver National Institute of Child Health and Human Development, the National Institute of Mental Health, the National Institute on Minority Health and Health Disparities, the National Institute of Neurological Disorders and Stroke, the NIH Office of Behavioral and Social Sciences Research, and the NIH Office of Research on Women’s Health), as well as the Centers for Disease Control and Prevention – Division of Adolescent and School Health. This repository will store data generated by ABCD investigators, serve as a collaborative platform for harmonizing these data, and share those data with qualified researchers.

Academic Seismic Portal at LDEO

ASP at LDEO

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The MGDS Academic Seismic Portal at Lamont-Doherty Earth Observatory (ASP-LDEO), now part of the IEDA Data Facility, was initiated in 2003 to preserve and provide open access to multi-channel seismic (MCS) and single channel seismic (SCS) field data collected for academic research supported by the US National Science Foundation. Multi-channel data are primarily from the marine seismic vessels operated by Lamont-Doherty Earth Observatory of Columbia University. Modern single channel seismic data from other vessels including the R/V Palmer and USCG Healy, as well as data from portable seismic systems, are also served. The development of the Academic Seismic Portal has focused on the need to recover high value MCS data from older surveys as well as to establish sustainable procedures for preservation of data from modern programs. During the final two years of R/V Ewing operations, procedures were established for routine transfer of MCS data along with navigation and acquisition parameters, and other needed documentation to the ASP. Transfer of seismic data and acquisition information is now routine for the National Marine Seismic Facility, the R/V Marcus G. Langseth, which began science operations in February 2008. Data are documented and incorporated into the data system with full access restrictions protecting the scientists' rights to exclusive access during the proprietary hold period. Submission of data to the ASP helps ensure that NSF requirements for data sharing as outlined in the NSF OCE Data Policy are satisfied. Data from the Academic Seismic Portal at UTIG has been migrated to LDEO. As we continue to verify the accuracy and completeness of this data, there may be temporary issues with some seismic metadata and web services.

Academic Seismic Portal at UTIG

ASP

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>>>!!!<<< On June 1, 2020, the Academic Seismic Portal repositories at UTIG were merged into a single collection hosted at Lamont-Doherty Earth Observatory. Content here was removed July 1, 2020. Visit the Academic Seismic Portal @LDEO! https://www.marine-geo.org/collections/#!/collection/Seismic#summary (https://www.re3data.org/repository/r3d100010644) >>>!!!<<<

Academic Torrents

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Academic Torrents is a distributed data repository. The academic torrents network is built for researchers, by researchers. Its distributed peer-to-peer library system automatically replicates your datasets on many servers, so you don't have to worry about managing your own servers or file availability. Everyone who has data becomes a mirror for those data so the system is fault-tolerant.

AceView

AceView genes

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AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release. Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm. In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.

ACSS Dataverse

Arab Council for the Social Sciences Dataverse

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The ACSS Dataverse is a repository of interdisciplinary social science research data produced in and on the Arab region. The ACSS Dataverse, part of an initiative of the Arab Council for the Social Sciences in collaboration with the Odum Institute for Research in Social Science at the University of North Carolina at Chapel Hill, preserves and facilitates access to social science datasets in and on the Arab region and is open to relevant research data deposits.

Addgene

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Addgene archives and distributes plasmids for researchers around the globe. They are working with thousands of laboratories to assemble a high-quality library of published plasmids for use in research and discovery. By linking plasmids with articles, scientists can always find data related to the materials they request.

AfDB Statistical Data Portal

formerly: Open data for Africa

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The African Development Bank Group (AfDB) is committed to supporting statistical development in Africa as a sound basis for designing and managing effective development policies for reducing poverty on the continent. Reliable and timely data is critical to setting goals and targets as well as evaluating project impact. Reliable data constitutes the single most convincing way of getting the people involved in what their leaders and institutions are doing. It also helps them to get involved in the development process, thus giving them a sense of ownership of the entire development process. The AfDB has a large team of researchers who focus on the production of statistical data on economic and social situations. The data produced by the institution’s statistics department constitutes the background information in the Bank’s flagship development publications. Besides its own publication, the AfDB also finances studies in collaboration with its partners. The Statistics Department aims to stand as the primary source of relevant, reliable and timely data on African development processes, starting with the data generated from its current management of the Africa component of the International Comparison Program (ICP-Africa). The Department discharges its responsibilities through two divisions: The Economic and Social Statistics Division (ESTA1); The Statistical Capacity Building Division (ESTA2)

Ag Data Commons

USDA’s Open Research Data

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Ag Data Commons provides access to a wide variety of open data relevant to agricultural research. We are a centralized repository for data already on the web, as well as for new data being published for the first time. While compliance with the U.S. Federal public access and open data directives is important, we aim to surpass them. Our goal is to foster innovative data re-use, integration, and visualization to support bigger, better science and policy.

Alaska Native Language Archive

Michael E. Krauss Alaska Native Language Archive

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The Alaska Native Language Archive houses documentation of the various Native languages of Alaska and helps to preserve and cultivate this unique heritage for future generations. As the premier repository worldwide for information relating to the Native languages of Alaska, the Archive serves researchers, teachers and students, as well as members of the broader community. The collection includes both published and unpublished materials in or on all of the Alaska Native languages and related languages. The collection has enduring cultural, historic, and intellectual value, particularly for Alaska Native language speakers and their descendants

Alaska Ocean Observing System

AOOS

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Alaska Ocean Observing System (AOOS) provides ocean and coastal observations data. The AOOS is governed by the Integrated Ocean Observing System (IOOS) which is a partnership among federal, regional, academic and private sector groups. The Ocean Data Explorer contains scientific and management information including real-time sensor feeds, operational oceanographic and atmospheric models, satellite observations and GIS data sets that describe the biological, chemical and physical characteristics of Alaska and its surrounding waters. This map offers many new updated features that build upon the existing data system.

Alaska Satellite Facility SAR Data Center

ASF SDC

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The SAR Data Center has a large data archive of Synthetic Aperture Radar (SAR) from a variety of sensors available at no cost. Much of the SAR data in the ASF SDC archive is limited in distribution to the scientific research community and U.S. Government Agencies. In accordance with the Memoranda of Understanding (MOU) between the relevant flight agencies (CSA, ESA, JAXA) and the U.S. State Department, the ASF SDC does not distribute SAR data for commercial use. The research community can access the data (ERS-1, ERS-2, JERS-1, RADARSAT-1, and ALOS PALSAR) via a brief proposal process.

Alzforum

Networking for a cure

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Alzforum is an independent research project to develop an online community resource to manage scientific knowledge, information, and data about Alzheimer disease (AD).

Alzheimer's Disease Neuroimaging Initiative Image and Data Archive

ADNI Image and Data Archive

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All ADNI data are shared without embargo through the LONI Image and Data Archive (IDA), a secure research data repository. Interested scientists may obtain access to ADNI imaging, clinical, genomic, and biomarker data for the purposes of scientific investigation, teaching, or planning clinical research studies. "The Alzheimer’s Disease Neuroimaging Initiative (ADNI) unites researchers with study data as they work to define the progression of Alzheimer’s disease (AD). ADNI researchers collect, validate and utilize data, including MRI and PET images, genetics, cognitive tests, CSF and blood biomarkers as predictors of the disease. Study resources and data from the North American ADNI study are available through this website, including Alzheimer’s disease patients, mild cognitive impairment subjects, and elderly controls. "

AmeriFlux

Measuring carbon, water and energy flux across the Americas

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AmeriFlux is a network of PI-managed sites measuring ecosystem CO2, water, and energy fluxes in North, Central and South America. It was established to connect research on field sites representing major climate and ecological biomes, including tundra, grasslands, savanna, crops, and conifer, deciduous, and tropical forests. As a grassroots, investigator-driven network, the AmeriFlux community has tailored instrumentation to suit each unique ecosystem. This “coalition of the willing” is diverse in its interests, use of technologies and collaborative approaches. As a result, the AmeriFlux Network continually pioneers new ground.

Animal QTLdb

Animal Quantitative Trait Loci

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This Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house all publicly available QTL and trait mapping data (i.e. trait and genome location association data; collectively called "QTL data" on this site) on livestock animal species for easily locating and making comparisons within and between species. New database tools are continuely added to align the QTL and association data to other types of genome information, such as annotated genes, RH / SNP markers, and human genome maps. Besides the QTL data from species listed below, the QTLdb is open to house QTL/association date from other animal species where feasible. Note that the JAS along with other journals, now require that new QTL/association data be entered into a QTL database as part of their publication requirements.

AnimalGenome.ORG

BioMart AnimalGenome.ORG

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This is a animal and human genome database that uses the BioMart software.

Antarctic & Southern Ocean Data Portal

ASODS

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The Antarctic and Southern Ocean Data Portal, part of the US Antarctic Data Consortium, provides access to geoscience data, primarily marine, from the Antarctic region. The synthesis began in 2003 as the Antarctic Multibeam Bathymetry and Geophysical Data Synthesis (AMBS) with a focus on multibeam bathymetry field data and other geophysical data from the Southern Ocean collected with the R/V N. B. Palmer. In 2005, the effort was expanded to include all routine underway geophysical and oceanographic data collected with both the R/V N. B. Palmer and R/V L. Gould, the two primary research vessels serving the US Antarctic Program.

Antarctic Glaciological Data Center at NSIDC

AGDC

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<<<!!!<<< This repository is no longer available. >>>!!!>>> In 2016, NSIDC partnered with the United States Antarctic Program - Data Center (USAP-DC) at Columbia University to consolidate NSF glaciology data into a central USAP Project Catalog and a Data Repository for research datasets derived from these projects. From 2016 to 2018, the AGDC data sets were transferred to USAP-DC. All AGDC data previously archived with NSIDC are now available via the USAP-DC https://www.re3data.org/repository/r3d100010660.

ArkDB

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<<<!!!<<< The ArkDB is now CLOSED With apologies to anyone who still relies on the ArkDB data system or map-drawing tools, we've had to take the difficult decision to shut down the ArkDB system. We've not been funded to maintain it for many years now and have kept it in the air as best we could with the time that we had available but recent changes in personnel and continuing updates to the underpinning libraries mean that the effort required to keep it going outweighs the perceived benefits. If you feel that this is the wrong decision, please contact us to let us know and we'll see what we can do together You can always contact us on our Roslin Bioinformatics email address (roslin.bioinformatics@roslin.ed.ac.uk) The Roslin Bioinformatics Team 21st November 2018 >>>!!!>>>

ARM Data Center

Atmospheric Radiation Measurement Facility Data Center

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US Department of Energy’s Atmospheric Radiation Measurement (ARM) Data Center is a long-term archive and distribution facility for various ground-based, aerial and model data products in support of atmospheric and climate research. ARM facility currently operates over 400 instruments at various observatories (https://www.arm.gov/capabilities/observatories/). ARM Data Center (ADC) Archive currently holds over 11,000 data products with a total holding of over 3 petabytes of data that dates back to 1993, these include data from instruments, value added products, model outputs, field campaign and PI contributed data. The data center archive also includes data collected by ARM from related program (e.g., external data such as NASA satellite).

Array Express

functional genomics data

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ArrayExpress is one of the major international repositories for high-throughput functional genomics data from both microarray and high-throughput sequencing studies, many of which are supported by peer-reviewed publications. Data sets are submitted directly to ArrayExpress and curated by a team of specialist biological curators. In the past (until 2018) datasets from the NCBI Gene Expression Omnibus database were imported on a weekly basis. Data is collected to MIAME and MINSEQE standards.

ASAP

A systematic annotation package for community analysis of genomes

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ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute genome sequence data and gene expression data collected by or in collaboration with researchers at the University of Wisconsin - Madison. ASAP was designed to facilitate ongoing community annotation of genomes and to grow with genome projects as they move from the preliminary data stage through post-sequencing functional analysis. The ASAP database includes multiple genome sequences at various stages of analysis, and gene expression data from preliminary experiments.

AspGD

Aspergillus Genome Database

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>>>>!!!!<<<< AspGD data are being integrated into FungiDB. Please click here for additional details http://fungidb.org/ . Discussion of how to maximize the value of FungiDB for the Aspergillus research community will be a major topic at the upcoming AsperFest12 meeting at Asilomar (March 16-17, 2015). >>>>!!!!<<<< AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism (A. nidulans, or its teleomorph Emericella nidulans), an important pathogen of the immunocompromised (A. fumigatus), an agriculturally important toxin producer (A. flavus), and two species used in industrial processes (A. niger and A. oryzae). AspGD contains information about genes and proteins of multiple Aspergillus species; descriptions and classifications of their biological roles, molecular functions, and subcellular localizations; gene, protein, and chromosome sequence information; tools for analysis and comparison of sequences; and links to literature information; as well as a multispecies comparative genomics browser tool (Sybil) for exploration of orthology and synteny across multiple sequenced Aspergillus species.