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Found 16 result(s)

BAliBASE

Benchmark Alignment dataBASE

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A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets.

VirHostNet

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VirHostNet is a bioinformatic information system dedidacted to the biocuration, data integration, reproducible systems-level analysis and visualisation of Virus / Host protein-protein interactions Network based on graph theory. VirHostNet is an open and gold standard knowledgebase shared in PSI MITAB 2.5 format using the PSICQUIC webservice and distributed through the NDEx platform. VirHostNet is FAIR and is recognized as a COVID-19 ressource by Elixir bio.tools, the European Virus Bioinformatics Center and FAIRsharing.org.

IDOC-DATA

Integrated Data and Operation Center repository

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IDOC-DATA is a department of IDOC IDOC (Integrated Data & Operation Center) has existed since 2003 as a satellite operations center and data center for the Institute of Space Astrophysics (IAS) in Orsay, France. Since then, it has operated within the OSUPS (Observatoire des Sciences de l'Univers de l'Université Paris-Saclay - first french university in shanghai ranking), which includes three institutes: IAS, AIM (Astrophysique, Interprétation, Modélisation - IRFU, CEA) and GEOPS (Geosciences Paris-Saclay) . IDOC participates in the space missions of OSUPS and its partners, from mission design to long-term scientific data archiving. For each phase of the missions, IDOC offers three kinds of services in the scientific themes of OSUPS and therefore IDOC's activities are divided into three departments: IDOC-INSTR: instrument design and testing, IDOC-OPE: instrument operations, IDOC-DATA: data management and data value chain: to produce the different levels of data constructed from observations of these instruments and make them available to users for ergonomic and efficient scientific interpretation (IDOC-DATA). It includes the responsibility: - To build access to these datasets. - To offer the corresponding services such as catalogue management, visualization tools, software pipeline automation, etc. - To preserve the availability and reliability of this hardware and software infrastructure, its confidentiality where applicable and its security.

RAVE database

Radial Velocity Experiment Database

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RAVE (RAdial Velocity Experiment) is a multi-fiber spectroscopic astronomical survey of stars in the Milky Way using the 1.2-m UK Schmidt Telescope of the Anglo-Australian Observatory (AAO). The RAVE collaboration consists of researchers from over 20 institutions around the world and is coordinated by the Leibniz-Institut für Astrophysik Potsdam. As a southern hemisphere survey covering 20,000 square degrees of the sky, RAVE's primary aim is to derive the radial velocity of stars from the observed spectra. Additional information is also derived such as effective temperature, surface gravity, metallicity, photometric parallax and elemental abundance data for the stars. The survey represents a giant leap forward in our understanding of our own Milky Way galaxy; with RAVE's vast stellar kinematic database the structure, formation and evolution of our Galaxy can be studied.

Collaborative Research in Computational Neuroscience

CRCNS

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This website makes data available from the first round of data sharing projects that were supported by the CRCNS funding program. To enable concerted efforts in understanding the brain experimental data and other resources such as stimuli and analysis tools should be widely shared by researchers all over the world. To serve this purpose, this website provides a marketplace and discussion forum for sharing tools and data in neuroscience. To date we host experimental data sets of high quality that will be valuable for testing computational models of the brain and new analysis methods. The data include physiological recordings from sensory and memory systems, as well as eye movement data.

Plasma Physics Data Center

Centre de Données de la Physique de Plasma

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The CDPP is the French national data centre for natural plasmas of the solar system. The CDPP assures the long term preservation of data obtained primarily from instruments built using French resources, and renders them readily accessible and exploitable by the international community. The CDPP also provides services to enable on-line data analysis (AMDA), 3D data visualization in context (3DView), and a propagation tool which bridges solar perturbations to in-situ measurements. The CDPP is involved in the development of interoperability, participates in several Virtual Observatory projects, and supports data distribution for scientific missions (Solar Orbiter, JUICE).

FactGrid

a database for historians

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FactGrid is a Wikibase instance designed to be used by historians with a focus on international projects. The database is hosted by the University of Erfurt and coordinated at the Gotha Research Centre. Partners in joint ventures are Wikimedia Germany as the software provider and the German National Library in a project to open the GND to international research.

ReefTEMPS

Portail d'information du réseau Réseau d'observation des eaux côtières du Pacifique insulaire

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ReefTEMPS is a temperature, pressure, salinity and other observables sensor network in coastal area of South, West and South West of Pacific ocean, driven by UMR ENTROPIE. It is an observatory service from the French national research infrastructure ILICO for “coastal environments”. Some of the network’s sensors have been deployed since 1958. Nearly hundred sensors are actually deployed in 14 countries covering an area of more than 8000 km from East to West. The data are acquired at different rates (from 1sec to 30 mn) depending on sensors and sites. They are processed and described using Climate and Forecast Metadata Convention at the end of oceanographic campaigns organized for sensors replacement every 6 months to 2 years.

GéOsuna

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GeoNetwork portal for the Observatoire des Sciences de l'Univers Nantes Atlantique (Osuna)

ORDaR

OTELo Research Data Repository

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ORDaR is a data repository for research data in geoscience.

Pôle National de Données de Biodiversité

National Biodiversity Data Center

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In 2018, the Ministry of Higher Education, Research and Innovation has included in its roadmap the creation of a new infrastructure called the National Biodiversity Data Centre (PNDB). The PNDB's missions are part of a FAIR (Easy to Find, Accessible, Interoperable, Reusable) approach, and consist in - providing access to datasets and metadata, associated services and products derived from the analyses - promoting scientific leadership to identify gaps and foster the emergence of community-driven systems of users and producers - facilitate the sharing of practices with other research communities, encourage the sharing of data and their reuse, and be part of the reflection on the future Earth System infrastructure. - promote coherence with national, European and international efforts concerning access to and use of biodiversity research data and the promotion of products and services. The PNDB is supported by the Muséum national d'Histoire naturelle, more specifically by the UMS 2006 PatriNat, a MNHN CNRS and AFB unit. The project is closely linked with the FRB and several of its founding institutions (AFB, BRGM, CIRAD, CNRS, Ifremer, INERIS, INRA, IRD, IRSTEA, MNHN, Univ. Montpellier).

Bibliothèques Virtuelles Humanistes

BVH

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The program "Humanist Virtual Libraries" distributes heritage documents and pursues research associating skills in human sciences and computer science. It aggregates several types of digital documents: A selection of facsimiles of Renaissance works digitized in the Central Region and in partner institutions, the Epistemon Textual Database, which offers digital editions in XML-TEI, and Transcripts or analyzes of notarial minutes and manuscripts

BASS2000

Solar Survey Archive

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BASS2000 archives ground-based solar survey data, and a long term data from France's observatories. The database contains spectroheliographs, radioheliographs, coronographs, and synoptic maps. BASS2000 provides data as GIF, PNG, JPEG, MPEG, PS, and Compressed Files.

Paris Astronomical Data Centre

PADC

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Paris Astronomical Data Centre aims at providing VO access to its data collections, at participating to international standards developments, at implementing VO compliant simulation codes, data visualization and analysis software. This centre hosts high level permanent activities for tools and data distribution under the format of reference services. These sustainable services are recognized at the national level as CNRS labeled services. The various activities are organised as portals whose functions are to provide visibility and information on the projects and to encourage collaboration.

STARK-B

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STARK-B is a database of calculated widths and shifts of isolated lines of atoms and ions due to electron and ion collisions. This database is devoted to modeling and spectroscopic diagnostics of stellar atmospheres and envelopes. In addition, it is also devoted to laboratory plasmas, laser equipments and technological plasmas. So, the domain of temperatures and densities covered by the tables is wide and depends on the ionization degree of the considered ion. The temperature can vary from several thousands for neutral atoms to several hundred thousands of Kelvin for highly charged ions. The electron or ion density can vary from 1012 (case of stellar atmospheres) to several 1019cm-3 (some white dwarfs and some laboratory plasmas).

euHCVdb

european Hepatitis C Virus database

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The euHCVdb is mainly oriented towards protein sequence, structure and function analyses and structural biology of HCV.