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Found 28 result(s)

PubChem

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Pubchem contains 3 databases. 1. PubChem BioAssay: The PubChem BioAssay Database contains bioactivity screens of chemical substances described in PubChem Substance. It provides searchable descriptions of each bioassay, including descriptions of the conditions and readouts specific to that screening procedure. 2. PubChem Compound: The PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups. 3. PubChem Substance. The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.

opendata@uni-kiel

Forschungsdatenrepositorium der CAU

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opendata@uni-kiel is the open research data repository of Kiel University for FAIR data.

European Chemical Biology Database

ECBD

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The European Chemical Biology Database (ECBD) is a prototype database, currently being developed for EU-OPENSCREEN. The purpose of ECBD is to store and integrate screening data from EU-OPENSCREEN partners and contributors.

Barbara A. Mikulski Archive for Space Telescopes

MAST

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The Mikulski Archive for Space Telescopes (MAST) is a NASA funded project to support and provide to the astronomical community a variety of astronomical data archives, with the primary focus on scientifically related data sets in the optical, ultraviolet, and near-infrared parts of the spectrum. MAST is located at the Space Telescope Science Institute (STScI).

Open Data by Socrata

Socrata

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>>>!!!<<< This site is going away on April 1, 2021. General access to the site has been disabled and community users will see an error upon login. >>>!!!<<< Socrata’s cloud-based solution allows government organizations to put their data online, make data-driven decisions, operate more efficiently, and share insights with citizens.

B2SHARE Server Forschungszentrum Jülich

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B2SHARE allows publishing research data and belonging metadata. It supports different research communities with specific metadata schemas. This server is provided for researchers of the Research Centre Juelich and related communities.

Joint Genome Institute Data Portal

JGI Data Portal

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The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). All data generated by the DOE Joint Genome Institute is available through this repository once the data are published or public.

NCBI dbGaP

DataBase of Genotypes And Phenotypes

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The NCBI database of Genotypes and Phenotypes archives and distributes the results of studies that have investigated the interaction of genotype and phenotype, including genome-wide association studies, medical sequencing, molecular diagnostic assays, and association between genotype and non-clinical traits. The database provides summaries of studies, the contents of measured variables, and original study document text. dbGaP provides two types of access for users, open and controlled. Through the controlled access, users may access individual-level data such as phenotypic data tables and genotypes.

MaizeGDB

Maize Genetics and Genomics Database

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The Maize Genetics and Genomics Database focuses on collecting data related to the crop plant and model organism Zea mays. The project's goals are to synthesize, display, and provide access to maize genomics and genetics data, prioritizing mutant and phenotype data and tools, structural and genetic map sets, and gene models. MaizeGDB also aims to make the Maize Newsletter available, and provide support services to the community of maize researchers. MaizeGDB is working with the Schnable lab, the Panzea project, The Genome Reference Consortium, and iPlant Collaborative to create a plan for archiving, dessiminating, visualizing, and analyzing diversity data. MMaizeGDB is short for Maize Genetics/Genomics Database. It is a USDA/ARS funded project to integrate the data found in MaizeDB and ZmDB into a single schema, develop an effective interface to access this data, and develop additional tools to make data analysis easier. Our goal in the long term is a true next-generation online maize database.aize genetics and genomics database.

SURF Data Repository

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The SURF Data Repository is a user-friendly web-based data publication platform that allows researchers to store, annotate and publish research datasets of any size to ensure long-term preservation and availability of their data. The service allows any dataset to be stored, independent of volume, number of files and structure. A published dataset is enriched with complex metadata, unique identifiers are added and the data is preserved for an agreed-upon period of time. The service is domain-agnostic and supports multiple communities with different policy and metadata requirements.

TreeGenes

A forest tree genome database

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TreeGenes is a genomic, phenotypic, and environmental data resource for forest tree species. The TreeGenes database and Dendrome project provide custom informatics tools to manage the flood of information.The database contains several curated modules that support the storage of data and provide the foundation for web-based searches and visualization tools. GMOD GUI tools such as CMAP for genetic maps and GBrowse for genome and transcriptome assemblies are implemented here. A sample tracking system, known as the Forest Tree Genetic Stock Center, sits at the forefront of most large-scale projects. Barcode identifiers assigned to the trees during sample collection are maintained in the database to identify an individual through DNA extraction, resequencing, genotyping and phenotyping. DiversiTree, a user-friendly desktop-style interface, queries the TreeGenes database and is designed for bulk retrieval of resequencing data. CartograTree combines geo-referenced individuals with relevant ecological and trait databases in a user-friendly map-based interface. ---- The Conifer Genome Network (CGN) is a virtual nexus for researchers working in conifer genomics. The CGN web site is maintained by the Dendrome Project at the University of California, Davis.

CryptoDB

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CryptoDB is an integrated genomic and functional genomic database for the parasite Cryptosporidium and other related genera. CryptoDB integrates whole genome sequence and annotation along with experimental data and environmental isolate sequences provided by community researchers. The database includes supplemental bioinformatics analyses and a web interface for data-mining.

Array Express

functional genomics data

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ArrayExpress is one of the major international repositories for high-throughput functional genomics data from both microarray and high-throughput sequencing studies, many of which are supported by peer-reviewed publications. Data sets are submitted directly to ArrayExpress and curated by a team of specialist biological curators. In the past (until 2018) datasets from the NCBI Gene Expression Omnibus database were imported on a weekly basis. Data is collected to MIAME and MINSEQE standards.

Abacus Data Network

Abacus Dataverse Network

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The Abacus Data Network is a data repository collaboration involving Libraries at Simon Fraser University (SFU), the University of British Columbia (UBC), the University of Northern British Columbia (UNBC) and the University of Victoria (UVic).

GWAS Central

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GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. We actively gather datasets from public domain projects, and encourage direct data submission from the community.

Clinical Proteomic Tumor Analysis Consortium Data Portal

CPTAC Data Portal

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The CPTAC Data Portal is the centralized repository for the dissemination of proteomic data collected by the Proteome Characterization Centers (PCCs) for the CPTAC program. The portal also hosts analyses of the mass spectrometry data (mapping of spectra to peptide sequences and protein identification) from the PCCs and from a CPTAC-sponsored common data analysis pipeline (CDAP).

Coriolis

Operational Oceanography

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The Coriolis Data Centre handles operational oceanography measurements made in situ, complementing the measurement of the ocean surface made using instruments aboard satellites. This work is realised through the establishment of permanent networks with data collected by ships or autonomous systems that are either fixed or drifting. This data can be used to construct a snapshot of water mass structure and current intensity.

UCSD Metabolomics Workbench

Metabolomics Workbench

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With the creation of the Metabolomics Data Repository managed by Data Repository and Coordination Center (DRCC), the NIH acknowledges the importance of data sharing for metabolomics. Metabolomics represents the systematic study of low molecular weight molecules found in a biological sample, providing a "snapshot" of the current and actual state of the cell or organism at a specific point in time. Thus, the metabolome represents the functional activity of biological systems. As with other ‘omics’, metabolites are conserved across animals, plants and microbial species, facilitating the extrapolation of research findings in laboratory animals to humans. Common technologies for measuring the metabolome include mass spectrometry (MS) and nuclear magnetic resonance spectroscopy (NMR), which can measure hundreds to thousands of unique chemical entities. Data sharing in metabolomics will include primary raw data and the biological and analytical meta-data necessary to interpret these data. Through cooperation between investigators, metabolomics laboratories and data coordinating centers, these data sets should provide a rich resource for the research community to enhance preclinical, clinical and translational research.

DataStream

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DataStream is an open access platform for sharing information on freshwater health. It currently allows users to access, visualize, and download full water quality datasets collected by Indigenous Nations, community groups, researchers and governments throughout four regional hubs in the Atlantic Provinces, Great Lakes and Saint Lawrence Basin, Lake Winnipeg Basin and Mackenzie River Basin. DataStream was developed by The Gordon Foundation and is carried out in collaboration with regional monitoring networks.

National Data Archive: An Online Microdata Library

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The National Data Archive has been disseminating microdata from surveys and censuses primarily under the Ministry of Statistics and Programme Implementation (MoSPI), Government of India. The archive is powered by the National Data Archive (NADA, ver. 4.3) software with DDI Metadata standard. It serves as a portal for researchers to browse, search, and download relevant datasets freely; even with related documentation (viz. survey methodology, sampling procedures, questionnaires, instructions, survey reports, classifications, code directories, etc). A few data files require the user to apply for approval to access with no charge. Currently, the archive holds more than 144 datasets of the National Sample Surveys (NSS), Annual Survey of Industries (ASI), and the Economic Census as available with the Ministry. However, efforts are being made to include metadata of surveys conducted by the State Governments and other government agencies.

Energy Data eXchange

EDX

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The Energy Data eXchange (EDX) is an online collection of capabilities and resources that advance research and customize energy-related needs. EDX is developed and maintained by NETL-RIC researchers and technical computing teams to support private collaboration for ongoing research efforts, and tech transfer of finalized DOE NETL research products. EDX supports NETL-affiliated research by: Coordinating historical and current data and information from a wide variety of sources to facilitate access to research that crosscuts multiple NETL projects/programs; Providing external access to technical products and data published by NETL-affiliated research teams; Collaborating with a variety of organizations and institutions in a secure environment through EDX’s ;Collaborative Workspaces

UNAVCO

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UNAVCO promotes research by providing access to data that our community of geodetic scientists uses for quantifying the motions of rock, ice and water that are monitored by a variety of sensor types at or near the Earth's surface. After processing, these data enable millimeter-scale surface motion detection and monitoring at discrete points, and high-resolution strain imagery over areas of tens of square meters to hundreds of square kilometers. The data types include GPS/GNSS, imaging data such as from SAR and TLS, strain and seismic borehole data, and meteorological data. Most of these can be accessed via web services. In addition, GPS/GNSS datasets, TLS datasets, and InSAR products are assigned digital object identifiers.

Ag Data Commons

USDA’s Open Research Data

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Ag Data Commons provides access to a wide variety of open data relevant to agricultural research. We are a centralized repository for data already on the web, as well as for new data being published for the first time. While compliance with the U.S. Federal public access and open data directives is important, we aim to surpass them. Our goal is to foster innovative data re-use, integration, and visualization to support bigger, better science and policy.

Rolling Deck to Repository

R2R

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The Rolling Deck to Repository (R2R) Program provides a comprehensive shore-side data management program for a suite of routine underway geophysical, water column, and atmospheric sensor data collected on vessels of the academic research fleet. R2R also ensures data are submitted to the NOAA National Centers for Environmental Information for long-term preservation.

British Antarctic Survey

BAS

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British Antarctic Survey (BAS) has, for over 60 years, undertaken the majority of Britain's scientific research on and around the Antarctic continent. Atmospheric, biosphere, cryosphere, geosphere, hydrosphere, and Sun-Earth interactions metadata and data are available. Geographic information and collections are highlighted as well. Information and mapping services include a Discovery Metadata System, Data Access System, the Antarctic Digital Database (ADD), Geophysics Data Portal (BAS-GDP), ICEMAR, a fossil database, and the Antarctic Plant Database.