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Found 136 result(s)

OpenWorm

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OpenWorm aims to build the first comprehensive computational model of the Caenorhabditis elegans (C. elegans), a microscopic roundworm. With only a thousand cells, it solves basic problems such as feeding, mate-finding and predator avoidance. Despite being extremely well studied in biology, this organism still eludes a deep, principled understanding of its biology. We are using a bottom-up approach, aimed at observing the worm behaviour emerge from a simulation of data derived from scientific experiments carried out over the past decade. To do so we are incorporating the data available in the scientific community into software models. We are engineering Geppetto and Sibernetic, open-source simulation platforms, to be able to run these different models in concert. We are also forging new collaborations with universities and research institutes to collect data that fill in the gaps All the code we produce in the OpenWorm project is Open Source and available on GitHub.

Linguistic Data Consortium

LDC

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The Linguistic Data Consortium (LDC) is an open consortium of universities, libraries, corporations and government research laboratories. It was formed in 1992 to address the critical data shortage then facing language technology research and development. Initially, LDC's primary role was as a repository and distribution point for language resources. Since that time, and with the help of its members, LDC has grown into an organization that creates and distributes a wide array of language resources. LDC also supports sponsored research programs and language-based technology evaluations by providing resources and contributing organizational expertise. LDC is hosted by the University of Pennsylvania and is a center within the University’s School of Arts and Sciences.

International HapMap Project

国际人类基因组单体型图计划

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<<<!!!<<< OFFLINE >>>!!!>>> A recent computer security audit has revealed security flaws in the legacy HapMap site that require NCBI to take it down immediately. We regret the inconvenience, but we are required to do this. That said, NCBI was planning to decommission this site in the near future anyway (although not quite so suddenly), as the 1,000 genomes (1KG) project has established itself as a research standard for population genetics and genomics. NCBI has observed a decline in usage of the HapMap dataset and website with its available resources over the past five years and it has come to the end of its useful life. The International HapMap Project is a multi-country effort to identify and catalog genetic similarities and differences in human beings. Using the information in the HapMap, researchers will be able to find genes that affect health, disease, and individual responses to medications and environmental factors. The Project is a collaboration among scientists and funding agencies from Japan, the United Kingdom, Canada, China, Nigeria, and the United States. All of the information generated by the Project will be released into the public domain. The goal of the International HapMap Project is to compare the genetic sequences of different individuals to identify chromosomal regions where genetic variants are shared. By making this information freely available, the Project will help biomedical researchers find genes involved in disease and responses to therapeutic drugs. In the initial phase of the Project, genetic data are being gathered from four populations with African, Asian, and European ancestry. Ongoing interactions with members of these populations are addressing potential ethical issues and providing valuable experience in conducting research with identified populations. Public and private organizations in six countries are participating in the International HapMap Project. Data generated by the Project can be downloaded with minimal constraints. The Project officially started with a meeting in October 2002 (https://www.genome.gov/10005336/) and is expected to take about three years.

BioVel

Biodiversity Virtual e-Laboratory

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<<<!!!<<< This repository is no longer available. >>>!!!>>> BioVeL is a virtual e-laboratory that supports research on biodiversity issues using large amounts of data from cross-disciplinary sources. BioVeL supports the development and use of workflows to process data. It offers the possibility to either use already made workflows or create own. BioVeL workflows are stored in MyExperiment - Biovel Group http://www.myexperiment.org/groups/643/content. They are underpinned by a range of analytical and data processing functions (generally provided as Web Services or R scripts) to support common biodiversity analysis tasks. You can find the Web Services catalogued in the BiodiversityCatalogue.

CLARIN-LV repository

CLARIN Latvia repository

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CLARIN-LV is a national node of Clarin ERIC (Common Language Resources and Technology Infrastructure). The mission of the repository is to ensure the availability and long­ term preservation of language resources. The data stored in the repository are being actively used and cited in scientific publications.

TemplateFlow

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Reference anatomies of the brain and corresponding atlases play a central role in experimental neuroimaging workflows and are the foundation for reporting standardized results. The choice of such references —i.e., templates— and atlases is one relevant source of methodological variability across studies, which has recently been brought to attention as an important challenge to reproducibility in neuroscience. TemplateFlow is a publicly available framework for human and nonhuman brain models. The framework combines an open database with software for access, management, and vetting, allowing scientists to distribute their resources under FAIR —findable, accessible, interoperable, reusable— principles. TemplateFlow supports a multifaceted insight into brains across species, and enables multiverse analyses testing whether results generalize across standard references, scales, and in the long term, species, thereby contributing to increasing the reliability of neuroimaging results.

bio.tools

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bio.tools is a software registry for bioinformatics and the life sciences.

arthistoricum.net@heiDATA

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arthistoricum.net@heiDATA is the research data repository of arthistoricum.net (Specialized Information Service Art - Photography - Design). It provides art historians with the opportunity to permanently publish and archive research data in the field of art history in connection with an open access online publication (e.g. article, ejournal, ebook) hosted by Heidelberg University Library. All research data e.g. images, videos, audio files, tables, graphics etc. receive a DOI (Digital Object Identifier). The data publications can be cited, viewed and permanently linked to as distinct academic output.

GESIS Data Archive

GESIS Long-term digital preservation

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GESIS preserves (mainly quantitative) social research data to make it available to the scientific research community. The data is described in a standardized way, secured for the long term, provided with a permanent identifier (DOI), and can be easily found and reused through browser-optimized catalogs (https://search.gesis.org/).

Portal of Medical Data Models

MDM Portal

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MDM-Portal (Medical Data Models) is a meta-data registry for creating, analyzing, sharing and reusing medical forms. It serves as an infrastructure for academic (non-commercial) medical research to contribute a solution to this problem. It contains forms in the system-independent CDISC Operational Data Model (ODM) format with more than 500,000 data-elements. The Portal provides numerous core data sets, common data elements or data standards, code lists and value sets. This enables researchers to view, discuss, download and export forms in most common technical formats such as PDF, CSV, Excel, SQL, SPSS, R, etc.

New Zealand's Biological Heritage National Science Challenge Data Repository

NZ BioHeritage National Science Challenge Data Repository

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Data catalogue and repository for New Zealand's Biological Heritage National Science Challenge

Canadian Open Neuroscience Platform Portal

CONP

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The CONP portal is a web interface for the Canadian Open Neuroscience Platform (CONP) to facilitate open science in the neuroscience community. CONP simplifies global researcher access and sharing of datasets and tools. The portal internalizes the cycle of a typical research project: starting with data acquisition, followed by processing using already existing/published tools, and ultimately publication of the obtained results including a link to the original dataset. From more information on CONP, please visit https://conp.ca

Public Geodata Repository

OSGeo Public Geodata Repository

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OSGeo's mission is to support the collaborative development of open source geospatial software, in part by providing resources for projects and promoting freely available geodata. The Public Geodata Repository is a distributed repository and registry of data sources free to access, reuse, and re-distribute.

Atmosphere to Electrons, Data Archive and Portal

A2e, DAP

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Atmosphere to Electrons (A2e) is a new, multi-year, multi-stakeholder U.S. Department of Energy (DOE) research and development initiative tasked with improving wind plant performance and mitigating risk and uncertainty to achieve substantial reduction in the cost of wind energy production. The A2e strategic vision will enable a new generation of wind plant technology, in which smart wind plants are designed to achieve optimized performance stemming from more complete knowledge of the inflow wind resource and complex flow through the wind plant.

QsarDB

QSAR Data Base

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QSAR DataBank (QsarDB) is repository for (Quantitative) Structure-Activity Relationships ((Q)SAR) data and models. It also provides open domain-specific digital data exchange standards and associated tools that enable research groups, project teams and institutions to share and represent predictive in silico models.

Comprehensive R Archive Network

CRAN

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CRAN is a network of ftp and web servers around the world that store identical, up-to-date, versions of code and documentation for R. R is ‘GNU S’, a freely available language and environment for statistical computing and graphics which provides a wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project homepage for further information.

RADAR4Culture

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RADAR4Culture is a low-threshold and easy-to use service for sustainable publication and preservation of cultural heritage research data. It offers free publication for any data type and format according to the FAIR principles, independent of the researcher´s institutional affiliation. Through persistent identifiers (DOI) and a guaranteed retention period of at least 25 years, the research data remain available, citable and findable long-term. Currently, the offer is aimed exclusively at researchers at publicly funded research institutions and (art) universities as well as non-commercial academies, galleries, libraries, archives and museums in Germany. No contract is required and no data publication fees are charged. The researchers are responsible for the upload, organisation, annotation and curation of research data as well as the peer-review process (as an optional step) and finally their publication.

IPK Gatersleben

Leibniz Institute of Plant Genetics and Crop Plant Research

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The IPK stores a large volume of research results and information in various databases. The Institute of Plant Genetics and Crop Plant Research IPK Gatersleben, is a nonprofit research institution for crop genetics and molecular biology, and is part of the Leibniz Association. The mission of the IPK Gatersleben is to conduct basic and applied research in the area of plant genetics and crop plant research. The results of this work are not only of significant benefit to plant breeders and the agricultural industry, but also to the food, feed, and chemical industry. An additional research area, the use of renewable raw materials, is increasingly gaining in importance.

Sikt Research Data Archive

Sikt forskningsdataarkiv

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Sikt archives research data on people and society to make sure the data can be shared and is made available for reuse. We continuously enrich our data collections to provide a richer basis for research. Sikt’s main focus is quantitative data matrices on individuals, organisations, administrative, political, and geographical actors. The archive specialise in survey data, which undergoes extensive curation at the variable level and detailed metadata is produced and published in Norwegian and English.

GlyTouCan

International Glycan Repository

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GlyTouCan is the international glycan structure repository. This repository is a freely available, uncurated registry for glycan structures that assigns globally unique accession numbers to any glycan independent of the level of information provided by the experimental method used to identify the structure(s). Any glycan structure, ranging in resolution from monosaccharide composition to fully defined structures can be registered as long as there are no inconsistencies in the structure.

GFZ Data Services

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GFZ Data Services is a repository for research data and scientific software across the Earth System Sciences, hosted at GFZ. The curated data are archived, persistently accessible and published with digital object identifier (DOI). They range from large dynamic datasets from global monitoring networks with real-time aquisition, to international services in geodesy and geophysics, to the full suite of small and highly heterogeneous datasets collected by individual researchers or small teams ("long-tail data"). In addition to the DOI registration and data archiving itself, GFZ Data Services team offers comprehensive consultation by domain scientists and IT specialists. Among others, GFZ Data Services is data publisher for the IAG Services ICGEM, IGETS and ISG (IAG = Int. Association for Geodesy; ICGEM = Int. Center for Global Earth Models; IGETS = Int. Geodynamics and Earth Tide Service; ISG = Int. Service for the Geoid), the World Stress Map, INTERMAGNET, GEOFON, the Geophysical Instrument Pool Potsdam GIPP, TERENO, EnMAP Flight Campaigns, the Potsdam Institute for Climate Impact Research PIK, the Specialised Information Service for Solid Earth Geosciences (FID GEO) and hosts the GFZ Catalogue for the International Generic Sample Number IGSN.

TRR170-DB

Late Accretion Onto Terrestrial Planets

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The TRR170-DB was set up to manage data products of the collaborative research center TRR 170 'Late Accretion onto Terrestrial Planets' (https://www.trr170-lateaccretion.de/). However, meanwhile the repository also stores data by other institutions and researchers. Data include laboratory and other instrumental data on planetary samples, remote sensing data, geological maps and model simulations.

National Ecological Observatory Network

NEON

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Funded by the National Science Foundation (NSF) and proudly operated by Battelle, the National Ecological Observatory Network (NEON) program provides open, continental-scale data across the United States that characterize and quantify complex, rapidly changing ecological processes. The Observatory’s comprehensive design supports greater understanding of ecological change and enables forecasting of future ecological conditions. NEON collects and processes data from field sites located across the continental U.S., Puerto Rico, and Hawaii over a 30-year timeframe. NEON provides free and open data that characterize plants, animals, soil, nutrients, freshwater, and the atmosphere. These data may be combined with external datasets or data collected by individual researchers to support the study of continental-scale ecological change.

Environmental Data Initiative Repository

EDI Data Portal

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We preserve environmental data for open and reproducible science, to promote synthesis across space and time, and to aid in the assessment of environmental change and its consequences.

GigaDB

GigaScience Database

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GigaDB primarily serves as a repository to host data and tools associated with articles published by GigaScience Press; GigaScience and GigaByte (both are online, open-access journals). GigaDB defines a dataset as a group of files (e.g., sequencing data, analyses, imaging files, software programs) that are related to and support a unit-of-work (article or study). GigaDB allows the integration of manuscript publication with supporting data and tools.