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Found 183 result(s)

EUR Data Repository

Erasmus University Rotterdam Data Repository

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The EUR Data Repository [EDR] is the institutional data repository from the Erasmus University Rotterdam. The EUR Data Repository is an online platform where you showcase your research and make it findable, citable, and reusable for others.

Deposita Dados

Repositório Comum de Dados de Pesquisa

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The Common Research Data Repository (Deposita Dados) is a database for archiving, publishing, disseminating, preserving and sharing digital research data and its mission is to promote, support and facilitate the adoption of open access to the datasets of Brazilian researchers linked to scientific institutions that do not yet have their own research data repositories and/or of Brazilian researchers who have executed their datasets through scientific collaboration in foreign teaching and research institutions.

University of Manchester figshare

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The University selected figshare as a general purpose research data repository to enable researchers to share research data, facilitate open research practices and meet the evolving requirements of research funders and academic publishers. This is a public-facing platform for researchers to share their data and build, over time, a comprehensive representation of the research done at the University across all faculties and disciplines.

Plasma Physics Data Center

Centre de Données de la Physique de Plasma

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The CDPP is the French national data centre for natural plasmas of the solar system. The CDPP assures the long term preservation of data obtained primarily from instruments built using French resources, and renders them readily accessible and exploitable by the international community. The CDPP also provides services to enable on-line data analysis (AMDA), 3D data visualization in context (3DView), and a propagation tool which bridges solar perturbations to in-situ measurements. The CDPP is involved in the development of interoperability, participates in several Virtual Observatory projects, and supports data distribution for scientific missions (Solar Orbiter, JUICE).

RCSB Protein Data Bank

RCSB PDB

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The Protein Data Bank (PDB) archive is the single worldwide repository of information about the 3D structures of large biological molecules, including proteins and nucleic acids. These are the molecules of life that are found in all organisms including bacteria, yeast, plants, flies, other animals, and humans. Understanding the shape of a molecule helps to understand how it works. This knowledge can be used to help deduce a structure's role in human health and disease, and in drug development. The structures in the archive range from tiny proteins and bits of DNA to complex molecular machines like the ribosome.

BioGRID ORCS

BioGRID Open Repository of CRISPR Screens

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BioGRID ORCS is an open repository of CRISPR screens compiled through comprehensive curation efforts. The current index is version 1.0.3 and searches more than 49 publications and 58,161 genes to return more than 895 CRISPR screens from 3 major model organism species and 629 cell lines. All screen data are freely provided through our search index and available via download in a wide variety of standardized formats.

ORegAnno

Open regulatory annotation database

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<<<!!!<<< 2017-06-02: We recently suffered a server failure and are working to bring the full ORegAnno website back online. In the meantime, you may download the complete database here: http://www.oreganno.org/dump/ ; Data are also available through UCSC Genome Browser (e.g., hg38 -> Regulation -> ORegAnno) https://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=686342163_2it3aVMQVoXWn0wuCjkNOVX39wxy&c=chr1&g=oreganno >>>!!!>>> The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known regulatory elements from scientific literature. Annotation is collected from users worldwide for various biological assays and is automatically cross-referenced against PubMED, Entrez Gene, EnsEMBL, dbSNP, the eVOC: Cell type ontology, and the Taxonomy database, where appropriate, with information regarding the original experimentation performed (evidence). ORegAnno further provides an open validation process for all regulatory annotation in the public domain. Assigned validators receive notification of new records in the database and are able to cross-reference the citation to ensure record integrity. Validators have the ability to modify any record (deprecating the old record and creating a new one) if an error is found. Further, any contributor to the database can comment on any annotation by marking errors, or adding special reports into function as they see fit. These features of ORegAnno ensure that the collection is of the highest quality and uniquely provides a dynamic view of our changing understanding of gene regulation in the various genomes.

Research Data Unipd

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Research Data Unipd is a data archive and supports research produced by the members of the University of Padova. The service aims to facilitate data discovery, data sharing, and reuse, as required by funding institutions (eg. European Commission). Datasets published in the archive have a set of metadata that ensure proper description and discoverability.

Geochron

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Geochron is a global database that hosts geochronologic and thermochronologic information from detrital minerals. Information included with each sample consists of a table with the essential isotopic information and ages, a table with basic geologic metadata (e.g., location, collector, publication, etc.), a Pb/U Concordia diagram, and a relative age probability diagram. This information can be accessed and viewed with any web browser, and depending on the level of access desired, can be designated as either private or public. Loading information into Geochron requires the use of U-Pb_Redux, a Java-based program that also provides enhanced capabilities for data reduction, plotting, and analysis. Instructions are provided for three different levels of interaction with Geochron: 1. Accessing samples that are already in the Geochron database. 2. Preparation of information for new samples, and then transfer to Arizona LaserChron Center personnel for uploading to Geochron. 3. Preparation of information and uploading to Geochron using U-Pb_Redux.

EcoCyc Database

EcoCyc E. coli Database

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EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of the entire genome, and of transcriptional regulation, transporters, and metabolic pathways.

IEEE DataPort

DataPort

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IEEE DataPort™ is a universally accessible online data repository created, owned, and supported by IEEE, the world’s largest technical professional organization. It enables all researchers and data owners to upload their dataset without cost. IEEE DataPort makes data available in three ways: standard datasets, open access datasets, and data competition datasets. By default, all "standard" datasets that are uploaded are accessible to paid IEEE DataPort subscribers. Data owners have an option to pay a fee to make their dataset “open access”, so it is available to all IEEE DataPort users (no subscription required). The third option is to host a "data competition" and make a dataset accessible for free for a specific duration with instructions for the data competition and how to participate. IEEE DataPort provides workflows for uploading data, searching, and accessing data, and initiating or participating in data competitions. All datasets are stored on Amazon AWS S3, and each dataset uploaded by an individual can be up to 2TB in size. Institutional subscriptions are available to the platform to make it easy for all members of a given institution to utilize the platform and upload datasets.

Deutsches Textarchiv

DTA

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The German Text Archive (Deutsches Textarchiv, DTA) presents online a selection of key German-language works in various disciplines from the 17th to 19th centuries. The electronic full-texts are indexed linguistically and the search facilities tolerate a range of spelling variants. The DTA presents German-language printed works from around 1650 to 1900 as full text and as digital facsimile. The selection of texts was made on the basis of lexicographical criteria and includes scientific or scholarly texts, texts from everyday life, and literary works. The digitalisation was made from the first edition of each work. Using the digital images of these editions, the text was first typed up manually twice (‘double keying’). To represent the structure of the text, the electronic full-text was encoded in conformity with the XML standard TEI P5. The next stages complete the linguistic analysis, i.e. the text is tokenised, lemmatised, and the parts of speech are annotated. The DTA thus presents a linguistically analysed, historical full-text corpus, available for a range of questions in corpus linguistics. Thanks to the interdisciplinary nature of the DTA Corpus, it also offers valuable source-texts for neighbouring disciplines in the humanities, and for scientists, legal scholars and economists.

Jülich DATA

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Jülich DATA is a registry service to index all research data created at or in the context of Forschungszentrum Jülich. As an institutionial repository, it may also be used for data and software publications.

Biological and Chemical Oceanography Data Management Office

BCO-DMO

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The Biological and Chemical Oceanography Data Management Office (BCO-DMO) is a publicly accessible earth science data repository created to curate, publicly serve (publish), and archive digital data and information from biological, chemical and biogeochemical research conducted in coastal, marine, great lakes and laboratory environments. The BCO-DMO repository works closely with investigators funded through the NSF OCE Division’s Biological and Chemical Sections and the Division of Polar Programs Antarctic Organisms & Ecosystems. The office provides services that span the full data life cycle, from data management planning support and DOI creation, to archive with appropriate national facilities.

Academic Torrents

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Academic Torrents is a distributed data repository. The academic torrents network is built for researchers, by researchers. Its distributed peer-to-peer library system automatically replicates your datasets on many servers, so you don't have to worry about managing your own servers or file availability. Everyone who has data becomes a mirror for those data so the system is fault-tolerant.

MiCroKitS

formerly: MiCroKit

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During cell cycle, numerous proteins temporally and spatially localized in distinct sub-cellular regions including centrosome (spindle pole in budding yeast), kinetochore/centromere, cleavage furrow/midbody (related or homolog structures in plants and budding yeast called as phragmoplast and bud neck, respectively), telomere and spindle spatially and temporally. These sub-cellular regions play important roles in various biological processes. In this work, we have collected all proteins identified to be localized on kinetochore, centrosome, midbody, telomere and spindle from two fungi (S. cerevisiae and S. pombe) and five animals, including C. elegans, D. melanogaster, X. laevis, M. musculus and H. sapiens based on the rationale of "Seeing is believing" (Bloom K et al., 2005). Through ortholog searches, the proteins potentially localized at these sub-cellular regions were detected in 144 eukaryotes. Then the integrated and searchable database MiCroKiTS - Midbody, Centrosome, Kinetochore, Telomere and Spindle has been established.

Strasbourg Astronomical Data Center

CDS

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Strasbourg astronomical Data Center (CDS) is dedicated to the collection and worldwide distribution of astronomical data and related information. Alongside data curation and service maintenance responsibilities, the CDS undertakes R&D activities that are fundamental to ensure the long term sustainability in a domain in which technology evolves very quickly. R&D areas include informatics, big data, and development of the astronomical Virtual Observatory (VO). CDS is a major actor in the VO with leading roles in European VO projects, the French Virtual Observatory and the International Virtual Observatory Alliance (IVOA). The CDS hosts the SIMBAD astronomical database, the world reference database for the identification of astronomical objects; VizieR, the catalogue service for the CDS reference collection of astronomical catalogues and tables published in academic journals; and the Aladin interactive software sky atlas for access, visualization and analysis of astronomical images, surveys, catalogues, databases and related data.

FLOSSmole

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FLOSSmole is a collaborative collection of free, libre, and open source software (FLOSS) data. FLOSSmole contains nearly 1 TB of data covering the period 2004 until now, about more than 500,000 different open source projects.

UniGene

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<<<!!!<<< This repository is no longer available>>>!!!>>>. Although the web pages are no longer available, you will still be able to download the final UniGene builds as static content from the FTP site https://ftp.ncbi.nlm.nih.gov/repository/UniGene/. You will also be able to match UniGene cluster numbers to Gene records by searching Gene with UniGene cluster numbers. For best results, restrict to the “UniGene Cluster Number” field rather than all fields in Gene. For example, a search with Mm.2108[UniGene Cluster Number] finds the mouse transthyretin Gene record (Ttr). You can use the advanced search page https://www.ncbi.nlm.nih.gov/gene/advanced to help construct these searches. Keep in mind that the Gene record contains selected Reference Sequences and GenBank mRNA sequences rather than the larger set of expressed sequences in the UniGene cluster.

USGS National Water Information System

NWIS

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Central data management of the USGS for water data that provides access to water-resources data collected at approximately 1.5 million sites in all 50 States, the District of Columbia, Puerto Rico, the Virgin Islands, Guam, American Samoa and the Commonwealth of the Northern Mariana Islands. Includes data on water use and quality, groundwater, and surface water.

Australian Data Archive

ADA Dataverse

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The Australian Data Archive (ADA) provides a national service for the collection and preservation of digital research data and to make these data available for secondary analysis by academic researchers and other users. Data are stored in seven sub-archives: Social Science, Historical, Indigenous, Longitudinal, Qualitative, Crime & Justice and International. Along with Australian data, ADA International is also a repository for studies by Australian researchers conducted in other countries, particularly throughout the Asia-Pacific region. The ADA International data catalogue includes links to studies from countries including New Zealand, Bangladesh, Cambodia, China, Indonesia, and several other countries. In 2017 the archive systems moved from the existing Nesstar platform to the new ADA Dataverse platform https://dataverse.ada.edu.au/

National Virtual Observatory

NVO

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<<<!!!>>> NVO - National Virtual Observatory is closed now <<<!!! >>> The National Virtual Observatory (NVO) was the predecessor of the VAO. It was a research project aimed at developing the technologies that would be used to build an operational Virtual Observatory. With the NVO era now over, a new organization has been funded in its place, with the explicit goal of creating useful tools for users to take advantage of the groundwork laid by the NVO. To carry on with the NVO's goals, we hereby introduce you to the Virtual Astronomical Observatory http://www.usvao.org/

Launchpad

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Launchpad is a software collaboration platform that provides: Bug tracking, Code hosting using Bazaar, Code reviews Ubuntu package building and hosting, Translations, Mailing lists, Answer tracking and FAQs, Specification tracking. Launchpad can host your project’s source code using the Bazaar version control system

Nobeyama Radio Polarimeters

NoRP

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Nobeyama Radio Polarimeters (NoRP) are observing the Sun with multiple frequencies in the microwave range. It is capable to obtain the total coming flux and the circular-polarization degree.

Linguistic Data Consortium

LDC

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The Linguistic Data Consortium (LDC) is an open consortium of universities, libraries, corporations and government research laboratories. It was formed in 1992 to address the critical data shortage then facing language technology research and development. Initially, LDC's primary role was as a repository and distribution point for language resources. Since that time, and with the help of its members, LDC has grown into an organization that creates and distributes a wide array of language resources. LDC also supports sponsored research programs and language-based technology evaluations by providing resources and contributing organizational expertise. LDC is hosted by the University of Pennsylvania and is a center within the University’s School of Arts and Sciences.