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Found 83 result(s)

Sequence Read Archive

SRA

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The Sequence Read Archive stores the raw sequencing data from such sequencing platforms as the Roche 454 GS System, the Illumina Genome Analyzer, the Applied Biosystems SOLiD System, the Helicos Heliscope, and the Complete Genomics. It archives the sequencing data associated with RNA-Seq, ChIP-Seq, Genomic and Transcriptomic assemblies, and 16S ribosomal RNA data.

openICPSR

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A service of the Inter-university Consortium for Political and Social Research (ICPSR), openICPSR is a self-publishing repository for social, behavioral, and health sciences research data. openICPSR is particularly well-suited for the deposit of replication data sets for researchers who need to publish their raw data associated with a journal article so that other researchers can replicate their findings.

FlyReactome

a curated knowledgebase of drosophila melanogaster pathways

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<<<!!!<<< This repository is no longer available. This record is out dated >>>!!!>>>- eir fields, maintained by the FlyReactome staff.

Bioconductor

Open Source Software for Bioinformatics

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Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.

Environmental Dataset Gateway

EPA's official open data catalog

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<<<!!!<<< This repository is no longer available. The Environmental Dataset Gateway (EDG) has provided access to EPA's Open Data resources. Metadata records contributed by EPA Regions, Program Offices, and Research Laboratories that link to geospatial and non-geospatial resources (e.g., data, Web services, or applications) are now discoverable through Data.gov. https://www.re3data.org/repository/r3d100010078 >>>!!!>>>

Speech and Language Data Repository

SLDR

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>>>>>!!!<<<<< As of 01/12/2015, deposit of data on SLDR website will be suspended to allow the public opening of Ortolang platform https://www.ortolang.fr/#/market/home .>>>>>!!!<<<<<

MHKDR

Marine and Hydrokinetic Data Repository

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The MHKDR is the repository for all data collected using funds from the Water Power Technologies Office (WPTO) of the U.S. Department of Energy (DOE). It was established to receive, manage, and make available all water power relevant data generated from projects funded by the DOE Water Power Technologies Office. This includes data from WPTO-funded projects associated with any portion of the water power project life-cycle (exploration, development, operation), as well as data produced by WPTO-funded research.

Immune Epitope Database

IEDB

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IEDB offers easy searching of experimental data characterizing antibody and T cell epitopes studied in humans, non-human primates, and other animal species. Epitopes involved in infectious disease, allergy, autoimmunity, and transplant are included. The IEDB also hosts tools to assist in the prediction and analysis of B cell and T cell epitopes.

DisProt

Database of Protein Disorder

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The Database of Protein Disorder (DisProt) is a curated database that provides information about proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part. DisProt is a community resource annotating protein sequences for intrinsically disorder regions from the literature. It classifies intrinsic disorder based on experimental methods and three ontologies for molecular function, transition and binding partner.

Henry A. Murray Research Archive at IQSS, Harvard University

Murray Archive

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The Henry A. Murray Research Archive is Harvard's endowed, permanent repository for quantitative and qualitative research data at the Institute for Quantitative Social Science, and provides physical storage for the entire IQSS Dataverse Network. Our collection comprises over 100 terabytes of data, audio, and video. We preserve in perpetuity all types of data of interest to the research community, including numerical, video, audio, interview notes, and other data. We accept data deposits through this web site, which is powered by our Dataverse Network software

Ag Data Commons

USDA’s Open Research Data

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Ag Data Commons provides access to a wide variety of open data relevant to agricultural research. We are a centralized repository for data already on the web, as well as for new data being published for the first time. While compliance with the U.S. Federal public access and open data directives is important, we aim to surpass them. Our goal is to foster innovative data re-use, integration, and visualization to support bigger, better science and policy.

Neotoma Paleoecology Database

Neotoma

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Neotoma is a multiproxy paleoecological database that covers the Pliocene-Quaternary, including modern microfossil samples. The database is an international collaborative effort among individuals from 19 institutions, representing multiple constituent databases. There are over 20 data-types within the Neotoma Paleoecological Database, including pollen microfossils, plant macrofossils, vertebrate fauna, diatoms, charcoal, biomarkers, ostracodes, physical sedimentology and water chemistry. Neotoma provides an underlying cyberinfrastructure that enables the development of common software tools for data ingest, discovery, display, analysis, and distribution, while giving domain scientists control over critical taxonomic and other data quality issues.

CCHDO

CLIVAR and Carbon Hydrographic Data Office

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The CCHDO provides access to standard, well-described datasets from reference-quality repeat hydrography expeditions. It curates high quality full water column Conductivity-Temperature-Depth (CTD), hydrographic, carbon and tracer data from over 2,500 cruises from ~30 countries. It is the official data center for CTD and water sample profile data from the Global Ocean Ship-Based Hydrographic Investigations Program (GO-SHIP), as well as for WOCE, US Hydro, and other high quality repeat hydrography lines (e.g. SOCCOM, HOT, BATS, WOCE, CARINA.)

Laboratory of Neuroimaging Image & Data Archive

LONI Image & Data Archive

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LONI’s Image and Data Archive (IDA) is a secure data archiving system. The IDA uses a robust infrastructure to provide researchers with a flexible and simple interface for de-identifying, searching, retrieving, converting, and disseminating their biomedical data. With thousands of investigators across the globe and more than 21 million data downloads to data, the IDA guarantees reliability with a fault-tolerant network comprising multiple switches, routers, and Internet connections to prevent system failure.

ImmPort

Immunology Database and Analysis Portal

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The Immunology Database and Analysis Portal (ImmPort) archives clinical study and trial data generated by NIAID/DAIT-funded investigators. Data types housed in ImmPort include subject assessments i.e., medical history, concomitant medications and adverse events as well as mechanistic assay data such as flow cytometry, ELISA, ELISPOT, etc. --- You won't need an ImmPort account to search for compelling studies, peruse study demographics, interventions and mechanistic assays. But why stop there? What you really want to do is download the study, look at each experiment in detail including individual ELISA results and flow cytometry files. Perhaps you want to take those flow cytometry files for a test drive using FLOCK in the ImmPort flow cytometry module. To download all that interesting data you will need to register for ImmPort access.

CRAWDAD

Community Resource for Archiving Wireless Data At Dartmouth (US site)

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<<<!!!<<< CRAWDAD has moved to IEEE-Dataport https://www.re3data.org/repository/r3d100012569 The datasets in the Community Resource for Archiving Wireless Data at Dartmouth (CRAWDAD) repository are now hosted as the CRAWDAD Collection on IEEE Dataport. After nearly two decades as a stand-alone archive at crawdad.org, the migration of the collection to IEEE DataPort provides permanence and new visibility. >>>!!!>>>

Strong Motion Virtual Data Center

Strong Motion VDC

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The VDC is a public, web-based search engine for accessing worldwide earthquake strong ground motion data. While the primary focus of the VDC is on data of engineering interest, it is also an interactive resource for scientific research and government and emergency response professionals.

Smithsonian figshare

Smithsonian Research Data

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Smithsonian figshare is best for sharing data that need a DOI including those that underlie peer-reviewed publications; bounded datasets of mixed formats; or data that is periodically updated and needs to be versioned. See the Figshare Confluence site for more information.

GIS Data Depot

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The repository is no longer available. >>>!!!<<< 2018-09-14: no more access to GIS Data Depot >>>!!!<<<

Joint Genome Institute Data Portal

JGI Data Portal

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The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). All data generated by the DOE Joint Genome Institute is available through this repository once the data are published or public.

Brainlife

brain life

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>>>!!!<<< duplicate >>>!!!<<< see https://www.re3data.org/repository/r3d100012397

OMNIWeb

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Hourly "Near-Earth" solar wind magnetic field and plasma data, energetic proton fluxes (>1 to >60 MeV), and geomagnetic and solar activity indices. OMNIWeb is part of "Space Physics Data Facility" (https://www.re3data.org/repository/r3d100010168 ).

Astromaterials Data System

AstroMat

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The Astromaterials Data System (AstroMat) is a data infrastructure to store, curate, and provide access to laboratory data acquired on samples curated in the Astromaterials Collection of the Johnson Space Center. AstroMat is developed and operated at the Lamont-Doherty Earth Observatory of Columbia University and funded by NASA.

Array Express

functional genomics data

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ArrayExpress is one of the major international repositories for high-throughput functional genomics data from both microarray and high-throughput sequencing studies, many of which are supported by peer-reviewed publications. Data sets are submitted directly to ArrayExpress and curated by a team of specialist biological curators. In the past (until 2018) datasets from the NCBI Gene Expression Omnibus database were imported on a weekly basis. Data is collected to MIAME and MINSEQE standards.

UCLA Dataverse

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UCLA Library is adopting Dataverse, the open source web application designed for sharing, preserving and using research data. UCLA Dataverse will allow data, text, software, scripts, data visualizations, etc., created from research projects at UCLA to be made publicly available, widely discoverable, linkable, and ultimately, reusable