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Found 25 result(s)

Protist EST Program Database

PEP Database

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<<<!!!<<< The PEP database (TBestDB)--Defunct as of 2017-04 >>>!!!>>> https://megasun.bch.umontreal.ca/pepdb/pepdb.html

Carleton University Dataverse Collection

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The Carleton University Data Repository Dataverse is the research data repository for Carleton University. It is managed by the Data Services in the MacOdrum Library. The repository also houses the MacOdrum Library Dataverse Collection which contains numerous public opinion polls.

The Monarch Initiative

Monarch Initiative

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As with most biomedical databases, the first step is to identify relevant data from the research community. The Monarch Initiative is focused primarily on phenotype-related resources. We bring in data associated with those phenotypes so that our users can begin to make connections among other biological entities of interest. We import data from a variety of data sources. With many resources integrated into a single database, we can join across the various data sources to produce integrated views. We have started with the big players including ClinVar and OMIM, but are equally interested in boutique databases. You can learn more about the sources of data that populate our system from our data sources page https://monarchinitiative.org/about/sources.

Barbara A. Mikulski Archive for Space Telescopes

MAST

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The Mikulski Archive for Space Telescopes (MAST) is a NASA funded project to support and provide to the astronomical community a variety of astronomical data archives, with the primary focus on scientifically related data sets in the optical, ultraviolet, and near-infrared parts of the spectrum. MAST is located at the Space Telescope Science Institute (STScI).

Digitale Sammlungen

Digital Collections

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The Digital Collections include digitized manuscripts, prints, music, maps, photographs, newspapers and magazines from the rich holdings of the Bayerische Staatsbibliothek. Almost the entire content (>98%) is available for download for research purposes or via IIIF APIs, including all available OCR data.

AceView

AceView genes

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AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release. Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm. In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.

data.world

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A data repository and social network so that researchers can interact and collaborate, also offers tutorials and datasets for data science learning. "data.world is designed for data and the people who work with data. From professional projects to open data, data.world helps you host and share your data, collaborate with your team, and capture context and conclusions as you work."

Medienarchiv der Zürcher Hochschule der Künste

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The Media Archive of the Zurich University of the Arts is the platform for collaborative work, sharing and archiving of media at the ZHdK. It is available to students, lecturers, reserarchers and staff. The areas of application of the media archive are mainly focused on teaching and research, but the ZHdK departments archive and university communication also benefit. The media archive manages a wide range of visual and audiovisual content and supports collaborative forms of working. It serves as an instutional repository for research data management and as a platform for hybrid publications.

NCBI Genome

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<<<!!!<<< Effective May 2024, NCBI's Genome resource will no longer be available. NCBI Genome data can now be found on the NCBI Datasets taxonomy pages. https://www.re3data.org/repository/r3d100014298 >>>!!!>>> The Genome database contains annotations and analysis of eukaryotic and prokaryotic genomes, as well as tools that allow users to compare genomes and gene sequences from humans, microbes, plants, viruses and organelles. Users can browse by organism, and view genome maps and protein clusters.

B2SHARE Server Forschungszentrum Jülich

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B2SHARE allows publishing research data and belonging metadata. It supports different research communities with specific metadata schemas. This server is provided for researchers of the Research Centre Juelich and related communities.

ScienceBase USGS

ScienceBase catalog

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ScienceBase provides access to aggregated information derived from many data and information domains, including feeds from existing data systems, metadata catalogs, and scientists contributing new and original content. ScienceBase architecture is designed to help science teams and data practitioners centralize their data and information resources to create a foundation needed for their work. ScienceBase, both original software and engineered components, is released as an open source project to promote involvement from the larger scientific programming community both inside and outside the USGS.

Cancer Models Database

caMOD

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>>>!!!<<< The NCI Cancer Models Database, caMOD, was retired on December 24, 2015. Information about many of the mouse models hosted in caMOD was obtained from the Jackson Laboratory Mouse Tumor Biology (MTB) Database and can be accessed through that resource http://tumor.informatics.jax.org/mtbwi/index.do . See caMOD Retirement Announcement https://wiki.nci.nih.gov/display/caMOD/caMOD+Retirement+Announcement >>>>!!<<< Query the Cancer Models database for models submitted by fellow researchers. Retrieve information about the making of models, their genetic description, histopathology, derived cell lines, associated images, carcinogenic agents, and therapeutic trials. Links to associated publications and other resources are provided.

Comparative Toxicogenomics Database

CTD

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CTD is a robust, publicly available database that aims to advance understanding about how environmental exposures affect human health. It provides manually curated information about chemical–gene/protein interactions, chemical–disease and gene–disease relationships. These data are integrated with functional and pathway data to aid in development of hypotheses about the mechanisms underlying environmentally influenced diseases. We also have additional ongoing projects involving manual curation of exposome data and chemical–phenotype relationships to help identify pre–disease biomarkers resulting from environmental exposures. The initial release of CTD was on November 12, 2004. We’re grateful to our strong community support and encourage you to give us feedback so we can continue to evolve with your research needs.

European Union Open Data Portal

EU Open Data Portal

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The European Union Open Data Portal is the single point of access to a growing range of data from the institutions and other bodies of the European Union (EU). Data are free for you to use and reuse for commercial or non-commercial purposes. By providing easy and free access to data, the portal aims to promote their innovative use and unleash their economic potential. It also aims to help foster the transparency and the accountability of the institutions and other bodies of the EU. The EU Open Data Portal is managed by the Publications Office of the European Union. Implementation of the EU's open data policy is the responsibility of the Directorate-General for Communications Networks, Content and Technology of the European Commission.

TRR170-DB

Late Accretion Onto Terrestrial Planets

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The TRR170-DB was set up to manage data products of the collaborative research center TRR 170 'Late Accretion onto Terrestrial Planets' (https://www.trr170-lateaccretion.de/). However, meanwhile the repository also stores data by other institutions and researchers. Data include laboratory and other instrumental data on planetary samples, remote sensing data, geological maps and model simulations.

GeoPlatform

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The GeoPlatform provides shared and trusted geospatial data, services, and applications for use by the public and by government agencies and partners to meet their mission needs.

TUdatalib

TUdatalib Repositorium

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TUdatalib is the institutional repository of the TU Darmstadt for research data. It enables the structured storage of research data and descriptive metadata, long-term archiving (at least 10 years) and, if desired, the publication of data including DOI assignment. In addition there is a fine granular rights and role management.

ESA Planetary Science Archive

PSA

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The European Space Agency's Planetary Science Archive (PSA) is the central repository for all scientific and engineering data returned by ESA's Solar System missions: currently including Giotto, Huygens, Mars Express, Venus Express, Rosetta, SMART-1 and ExoMars 16, as well as several ground-based cometary observations. Future missions hosted by the PSA will be Bepi Colombo, ExoMars Rover and Surface Platform and Juice.

Comparative RNA Web

CRW

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The Comparative RNA Web (CRW) Site disseminates information about RNA structure and evolution that has been determined using comparative sequence analysis. We present both raw (sequences, structure models, metadata) and processed (analyses, evolution, accuracy) data, organized into four main sections.

REDU - Unicamp Institutional Research Data Repository

Repositorio de Dados de Pesquisa da Unicamp

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REDU is the institutional open research data repository of the University of Campinas, Brazil. It contains research data produced by all research groups of the University, in a wide range of scientific domains, which are indexed by DataCite DOI. Created at the end of 2020, it is coordinated by a scientific and technical committee composed by data librarians, IT professionals, and scientists representing user groups. Implemented on top of Dataverse, it exports metadata using OAIS. Files with sensitive content (due to ethics or legal constraints) are not stored therein - rather, only their metadata is recorded in REDU, as well as contact information so that interested researchers can contact the persons responsible for the files for conditional subsequent access. It is being little by little populated, following the University's Open Science policies.

British Antarctic Survey

BAS

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British Antarctic Survey (BAS) has, for over 60 years, undertaken the majority of Britain's scientific research on and around the Antarctic continent. Atmospheric, biosphere, cryosphere, geosphere, hydrosphere, and Sun-Earth interactions metadata and data are available. Geographic information and collections are highlighted as well. Information and mapping services include a Discovery Metadata System, Data Access System, the Antarctic Digital Database (ADD), Geophysics Data Portal (BAS-GDP), ICEMAR, a fossil database, and the Antarctic Plant Database.

Trinity River Restoration Program DataPort

TRRP DataPort

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The Online Data Portal (ODP) is an evolving project to support collaborative river restoration projects, such as the TRRP. The goal is to provide a centralized clearing house of documents and data for program partners, stakeholders, and the public. The functionality and data holdings will continue to be expanded over the next few years. The ability to store Data Packages is new as of Fall 2011 and holdings should expand substantially in the months afterward. A project to scan many older documents also began in December 2011. Simple time-series datasets have long been stored in the ODP, but holdings of these data are likely to increase as TRRP implements an upcoming Data Management and Utility Plan. Major upgrades to the Interactive Map are expected to start in winter and spring of 2012. The long term vision is that many data resources will be accessible both by text searches and via the Interactive Map. The ODP will be available for use by other river restoration programs. ODP is followed by TRRP DataPort.

Australian Waterbird Surveys

AWS

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Australian Waterbird Surveys (AWS) is an information source of waterbird communities around Australia, based on surveys of their diversity and numbers. It relies on rigorous data collection protocols and includes more than 50 waterbird species and up to 30 years of survey data. This open source also includes the extent of flooding of thousands of wetlands observed during our surveys. As a group, waterbirds can be sentinels of the ecological health of our wetlands and rivers. We hope this free information system will help track long-term changes in the environment, provide an assessment tool for individual species, report on our national and international responsibilities and help improve the way we manage our rivers and wetlands. It has been developed with the support of research and government partners.

GAGE

Geodetic Facility for the Advancement of Geoscience

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UNAVCO promotes research by providing access to data that our community of geodetic scientists uses for quantifying the motions of rock, ice and water that are monitored by a variety of sensor types at or near the Earth's surface. After processing, these data enable millimeter-scale surface motion detection and monitoring at discrete points, and high-resolution strain imagery over areas of tens of square meters to hundreds of square kilometers. The data types include GPS/GNSS, imaging data such as from SAR and TLS, strain and seismic borehole data, and meteorological data. Most of these can be accessed via web services. In addition, GPS/GNSS datasets, TLS datasets, and InSAR products are assigned digital object identifiers.

CosmoHub

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CosmoHub is a web application based on Hadoop to perform interactive exploration and distribution of massive cosmological datasets