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Found 339 result(s)
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The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc). The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data. The UniProt Knowledgebase,is an expertly and richly curated protein database, consisting of two sections called UniProtKB/Swiss-Prot and UniProtKB/TrEMBL.
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The CSIRO Data Access Portal provides access to data published by CSIRO across a range of disciplines to facilitate sharing and reuse of data held by CSIRO.
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The UNAM opens the door to share millions of open data for the benefit of education and research. With this portal (www.datosabiertos.unam.mx) the university shares records of digital collections, academic research projects, repositories and publications to generate new knowledge. This way, it works as an online access point to search university collections authorized for their use, reuse and free redistribution by anyone, without copyright restrictions, patents or other control mechanisms, as long as the Terms of Free Use for UNAM Open Data are respected.
The UNAM Open Data Portal contains data, digital objects and geospatial layers of biological collections, artistic work, music, veterinary medicine, university projects, among others. It allows databases to be consulted and downloaded in open and structured formats. One of the most outstanding collections is the National Herbarium of Mexico (MEXU), with almost two million records and high resolution images of plants around the world, mainly collected in Mexico. MEXU is the largest herbarium in the country and in Latin America; it’s among one of the ten most active herbariums in the world.
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The CLARIN/Text+ repository at the Saxon Academy of Sciences and Humanities in Leipzig offers longterm preservation of digital resources, along with their descriptive metadata. The mission of the repository is to ensure the availability and longterm preservation of resources, to preserve knowledge gained in research, to aid the transfer of knowledge into new contexts, and to integrate new methods and resources into university curricula. Among the resources currently available in the Leipzig repository are a set of corpora of the Leipzig Corpora Collection (LCC), based on newspaper, Wikipedia and Web text. Furthermore several REST-based webservices are provided for a variety of different NLP-relevant tasks
The repository is part of the CLARIN infrastructure and part of the NFDI consortium Text+. It is operated by the Saxon Academy of Sciences and Humanities in Leipzig.
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GAWSIS is being developed and maintained by the Federal Office of Meteorology and Climatology MeteoSwiss in collaboration with the WMO GAW Secretariat, the GAW World Data Centres and other GAW representatives to improve the management of information about the GAW network of ground-based stations. The application is presently hosted by the Swiss Laboratories for Materials Testing and Research Empa.
GAWSIS provides the GAW community and other interested people with an up-to-date, searchable data base of
site descriptions, measurements programs and data available, contact people, bibliographic references. Linked data collections are hosted at the World Data Centers of the WMO Global Atmosphere Watch.
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WFCC Global Catalogue of Microorganisms (GCM) is expected to be a robust, reliable and user-friendly system to help culture collections to manage, disseminate and share the information related to their holdings. It also provides a uniform interface for the scientific and industrial communities to access the comprehensive microbial resource information.
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The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database accepts submissions via an online tool, or in a simple tab-delimited format. It also enables authors to submit supplementary information and link to it from the publication.
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Research data from University of Pretoria. This data repository facilitates data publishing, sharing and collaboration of academic research, allowing UP to manage and in some cases showcase its data to the wider research community.
Previously UPSpace (https://repository.up.ac.za/) was used for both datasets and research outputs. Now UP Research Data Repository is dedicated for datasets.
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<<<!!!<<< This repository is no longer available. >>>!!!>>>
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EBRAINS offers one of the most comprehensive platforms for sharing brain research data ranging in type as well as spatial and temporal scale. We provide the guidance and tools needed to overcome the hurdles associated with sharing data. The EBRAINS data curation service ensures that your dataset will be shared with maximum impact, visibility, reusability, and longevity, hhttps://www.ebrains.eu/data/find-data/. Find data - the user interface of the EBRAINS Knowledge Graph - allows you to easily find data of interest. EBRAINS hosts a wide range of data types and models from different species. All data are well described and can be accessed immediately for further analysis.
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Pubchem contains 3 databases. 1. PubChem BioAssay: The PubChem BioAssay Database contains bioactivity screens of chemical substances described in PubChem Substance. It provides searchable descriptions of each bioassay, including descriptions of the conditions and readouts specific to that screening procedure. 2. PubChem Compound: The PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups. 3. PubChem Substance. The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.
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The PLANKTON*NET data provider at the Alfred Wegener Institute for Polar and Marine Research is an open access repository for plankton-related information. It covers all types of phytoplankton and zooplankton from marine and freshwater areas. PLANKTON*NET's greatest strength is its comprehensiveness as for the different taxa image information as well as taxonomic descriptions can be archived. PLANKTON*NET also contains a glossary with accompanying images to illustrate the term definitions. PLANKTON*NET therefore presents a vital tool for the preservation of historic data sets as well as the archival of current research results.
Because interoperability with international biodiversity data providers (e.g. GBIF) is one of our aims, the architecture behind the new planktonnet@awi repository is observation centric and allows for mulitple assignment of assets (images, references, animations, etc) to any given observation. In addition, images can be grouped in sets and/or assigned tags to satisfy user-specific needs . Sets (and respective images) of relevance to the scientific community and/or general public have been assigned a persistant digital object identifier (DOI) for the purpose of long-term preservation (e.g. set ""Plankton*Net celebrates 50 years of Roman Treaties"", handle: 10013/de.awi.planktonnet.set.495)"
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The Marine Data Portal is a product of the “Underway”- Data initiative of the German Marine Research Alliance (Deutsche Allianz Meeresforschung - DAM) and is supported by the marine science centers AWI, GEOMAR and Hereon of the Helmholtz Association. This initiative aims to improve and standardize the systematic data collection and data evaluation for expeditions with German research vessels and marine observation. It supports scientists in their data management duties and fosters (data) science through FAIR and open access to marine research data. AWI, GEOMAR and Hereon develop this marine data hub (Marehub) to build a decentralized data infrastructure for processing, long-term archiving and dissemination of marine observation and model data and data products.
The Marine Data Portal provides user-friendly, centralized access to marine research data, reports and publications from a wide range of data repositories and libraries in the context of German marine research and its international collaboration.
The Marine Data Portal is developed by scientists for scientists in order to facilitate Findability and Access of marine research data for Reuse. It supports machine-readable and data driven science. Please note that the quality of the data may vary depending on the purpose for which it was originally collected.
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UCLA Library is adopting Dataverse, the open source web application designed for sharing, preserving and using research data. UCLA Dataverse will allow data, text, software, scripts, data visualizations, etc., created from research projects at UCLA to be made publicly available, widely discoverable, linkable, and ultimately, reusable
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The Reciprocal Net is a distributed database used by research crystallographers to store information about molecular structures; much of the data is available to the general public. The Reciprocal Net project is still under development. Currently, there are 18 participating crystallography laboratories online. The project is funded by the National Science Foundation (NSF) and part of the National Science Digital Library. The contents of this collection will come principally from structures contributed by participating crystallography laboratories, thus providing a means for teachers, students, and the general public to connect better with current chemistry research. The Reciprocal Net's emphasis is on obtaining structures of general interest and usefulness to those several classes of digital library users.
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-----<<<<< The repository is no longer available. This record is out-dated. >>>>>----- GEON is an open collaborative project that is developing cyberinfrastructure for integration of 3 and 4 dimensional earth science data. GEON will develop services for data integration and model integration, and associated model execution and visualization. Mid-Atlantic test bed will focus on tectonothermal, paleogeographic, and biotic history from the late-Proterozoicto mid-Paleozoic. Rockies test bed will focus on integration of data with dynamic models, to better understand deformation history. GEON will develop the most comprehensive regional datasets in test bed areas.
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BIBB has a strong tradition of survey-based research. It initiates and realises the collection of individual and firm-level data on crucial positions and transitions in the education and labour market system. The BIBB-FDZ covers a variety of data deploying different units of analysis and temporal designs and focusing on various thematic issues. Standard access to well prepared firm- and individual-level data on the attainment and utilization of vocational education and training
Documentation of these data sets, i.e. a description of their central characteristics, main issues and variables, data collection, anonymisation, weighting and recoding etc.
Advisory service on data choice, data access and handling, research potential and scope and validity of the data.
Supply of a range of data tools such as standard measures and classifications in the fields of education, occupations, industries and regions (if possible also including cross-national fields), formally anonymous data for remote data access, or references to publications with the data.
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The Australian National Corpus collates and provides access to assorted examples of Australian English text, transcriptions, audio and audio-visual materials. Text analysis tools are embedded in the interface allowing analysis and downloads in *.CSV format.
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Ridge 2000 is a multidisciplinary science research program focused on integrated geological and biological studies of the Earth-encircling oceanic spreading center system.
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AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release.
Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm.
In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.
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<<<!!!<<< This MultiDark application is now integrated into CosmoSim (https://www.cosmosim.org/ , all data and much more is available there. The old MultiDark server is no longer available. >>>!!!>>>
The MultiDark database provides results from cosmological simulations performed within the MultiDark project. This database can be queried by entering SQL statements directly into the Query Form. The access to that form and thus access to the public & private databases is password protected.
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The Golm Metabolome Database (GMD) facilitates the search for and dissemination of reference mass spectra from biologically active metabolites quantified using gas chromatography (GC) coupled to mass spectrometry (MS)
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Catena, the Digital Archive of Historic Gardens and Landscapes, is a collection of historic and contemporary images, including plans, engravings, and photographs, intended to support research and teaching in the fields of garden history and landscape studies. Created through the collaborative efforts of landscape historians and institutions, the initial offering of images is focused on the Villas as a Landscape Type.
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The National Earth System Science Data Sharing Service Platform is one of the 23 national science and technology infrastructure platforms identified by the Ministry of Science and Technology and the Ministry of Finance as the first batch of platforms. The platform is led by the Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences. Since its construction in 2003, more than 40 domestic and overseas units have participated in the platform construction. National Earth System Science Data Sharing Service Platform main development course:
The overall goal of the platform is to integrate and integrate the data resources generated by data center groups, universities, research institutes and scientists in China and abroad, to import international data resources and to receive the data resources generated by major national scientific research projects. Based on this, Processing data products. We will improve standards and operational mechanisms and provide data support for Earth system science research and sustainable socio-economic development through the Earth System Scientific Data Sharing Network Platform and professional service teams. The recent consolidation of data resources required to share the research on land surface systems and human-land relations.
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MycoCosm, the DOE JGI’s web-based fungal genomics resource, which integrates fungal genomics data and analytical tools for fungal biologists. It provides navigation through sequenced genomes, genome analysis in context of comparative genomics and genome-centric view. MycoCosm promotes user community participation in data submission, annotation and analysis.
- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
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re3data.org
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the database entries of re3data.org.
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Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
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- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-06-23
