Filter
Reset all

Subjects

Content Types

Countries

AID systems

API

Certificates

Data access

Data access restrictions

Database access

Database access restrictions

Database licenses

Data licenses

Data upload

Data upload restrictions

Enhanced publication

Institution responsibility type

Institution type

Keywords

Metadata standards

PID systems

Provider types

Quality management

Repository languages

Software

Syndications

Repository types

Versioning

  • * at the end of a keyword allows wildcard searches
  • " quotes can be used for searching phrases
  • + represents an AND search (default)
  • | represents an OR search
  • - represents a NOT operation
  • ( and ) implies priority
  • ~N after a word specifies the desired edit distance (fuzziness)
  • ~N after a phrase specifies the desired slop amount
Found 237 result(s)

Chempound

a Web2.0-inspired repository for physical science data

Subject(s)
Content type(s)
Country
Chempound is a new generation repository architecture based on RDF, semantic dictionaries and linked data. It has been developed to hold any type of chemical object expressible in CML and is exemplified by crystallographic experiments and computational chemistry calculations. In both examples, the repository can hold >50k entries which can be searched by SPARQL endpoints and pre-indexing of key fields. The Chempound architecture is general and adaptable to other fields of data-rich science. The Chempound software is hosted at http://bitbucket.org/chempound and is available under the Apache License, Version 2.0

Research Compendia

Researchcompendia

Subject(s)
Content type(s)
Country
>>>>!!!<<< As stated 2017-06-27 The website http://researchcompendia.org is no longer available; repository software is archived on github https://github.com/researchcompendia >>>!!!<<< The ResearchCompendia platform is an attempt to use the web to enhance the reproducibility and verifiability—and thus the reliability—of scientific research. we provide the tools to publish the "actual scholarship" by hosting data, code, and methods in a form that is accessible, trackable, and persistent. Some of our short term goals include: To expand and enhance the platform including adding executability for a greater variety of coding languages and frameworks, and enhancing output presentation. To expand usership and to test the ResearchCompendia model in a number of additional fields, including computational mathematics, statistics, and biostatistics. To pilot integration with existing scholarly platforms, enabling researchers to discover relevant Research Compendia websites when looking at online articles, code repositories, or data archives.

Stanford Microarray Database

SMD

Subject(s)
Content type(s)
Country
>>>!!!<<< SMD has been retired. After approximately fifteen years of microarray-centric research service, the Stanford Microarray Database has been retired. We apologize for any inconvenience; please read below for possible resolutions to your queries. If you are looking for any raw data that was directly linked to SMD from a manuscript, please search one of the public repositories. NCBI Gene Expression Omnibus EBI ArrayExpress All published data were previously communicated to one (or both) of the public repositories. Alternatively, data for publications between 1997 and 2004 were likely migrated to the Princeton University MicroArray Database, and are accessible there. If you are looking for a manuscript supplement (i.e. from a domain other than smd.stanford.edu), perhaps try searching the Internet Archive: Wayback Machine https://archive.org/web/ . >>>!!!<<< The Stanford Microarray Database (SMD) is a DNA microarray research database that provides a large amount of data for public use.

PubChem

Subject(s)
Content type(s)
Country
Pubchem contains 3 databases. 1. PubChem BioAssay: The PubChem BioAssay Database contains bioactivity screens of chemical substances described in PubChem Substance. It provides searchable descriptions of each bioassay, including descriptions of the conditions and readouts specific to that screening procedure. 2. PubChem Compound: The PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups. 3. PubChem Substance. The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.

eCrystals

eCrystals - Southampton

Subject(s)
Content type(s)
Country
eCrystals - Southampton is the archive for Crystal Structures generated by the Southampton Chemical Crystallography Group and the EPSRC UK National Crystallography Service.

Indian Genetic Disease Database

IGDD

Subject(s)
Content type(s)
Country
>>>!!!<<< The repository is no longer available. >>>!!!<<< Indian Genetic Disease Database (IGDD) is an initiative of CSIR Indian Institute of Chemical Biology. It is supported by Council of Scientific and Industrial Research (CSIR) and Department of Biotechnology (DBT) of India. The Indian people represent one-sixth of the world population and consists of a ethnically, geographically, and genetically diverse population. In some communities the ratio of genetic disorder is relatively high due to consanguineous marriage practiced in the community. This database has been created to keep track of mutations in the causal genes for genetic diseases common in India and help the physicians, geneticists, and other professionals retrieve and use the information for the benefit of the public. The database includes scientific information about these genetic diseases and disabilities, but also statistical information about these diseases in today's society. Data is categorized by body part affected and then by title of the disease.

Ningaloo Atlas

Subject(s)
Content type(s)
Country
The Ningaloo Atlas was created in response to the need for more comprehensive and accessible information on environmental and socio-economic data on the greater Ningaloo region. As such, the Ningaloo Atlas is a web portal to not only access and share information, but to celebrate and promote the biodiversity, heritage, value, and way of life of the greater Ningaloo region.

Madrigal Database

Cedar Madrigal

Subject(s)
Content type(s)
Country
The OpenMadrigal project seeks to develop and support an on-line database for geospace data. The project has been led by MIT Haystack Observatory since 1980, but now has active support from Jicamarca Observatory and other community members. Madrigal is a robust, World Wide Web based system capable of managing and serving archival and real-time data, in a variety of formats, from a wide range of ground-based instruments. Madrigal is installed at a number of sites around the world. Data at each Madrigal site is locally controlled and can be updated at any time, but shared metadata between Madrigal sites allow searching of all Madrigal sites at once from any Madrigal site. Data is local; metadata is shared.

NONCODE

Subject(s)
Content type(s)
Country
NONCODE is an integrated knowledge database dedicated to non-coding RNAs (excluding tRNAs and rRNAs). Now, there are 16 species in NONCODE(human, mouse, cow, rat, chicken, fruitfly, zebrafish, celegans, yeast, Arabidopsis, chimpanzee, gorilla, orangutan, rhesus macaque, opossum and platypus).The source of NONCODE includes literature and other public databases. We searched PubMed using key words ‘ncrna’, ‘noncoding’, ‘non-coding’,‘no code’, ‘non-code’, ‘lncrna’ or ‘lincrna. We retrieved the new identified lncRNAs and their annotation from the Supplementary Material or web site of these articles. Together with the newest data from Ensembl , RefSeq, lncRNAdb and GENCODE were processed through a standard pipeline for each species.

Newfoundland and Labrador Open Data

Subject(s)
Content type(s)
Country
The Newfoundland and Labrador Open Data repository increases access to government information and data.

Health Atlas

Leipzig Health Atlas

Subject(s)
Content type(s)
Country
The Health Atlas is an alliance of medical ontologists, medical systems biologists and clinical trials groups to design and implement a multi-functional and quality-assured atlas. It provides models, data and metadata on specific use cases from medical research projects from the partner institutions.

Yoda

Universiteit Utrecht, Your Data - Yoda

Subject(s)
Content type(s)
Country
Yoda publishes research data on behalf of researchers that are affiliated with Utrecht University, its research institutes and consortia where it acts as a coordinating body. Data packages are not limited to a particular field of research or license. Yoda publishes data packages via Datacite. To find data publications use: https://public.yoda.uu.nl/ , or the Datacite search engine: https://search.datacite.org/repositories/delft.uu

NAWI Water DAMS

National Alliance for Water Innovation Water Data Analysis and Management System

Subject(s)
Content type(s)
Country
Water DAMS (Water Data Analysis and Management System) provides access to foundational water treatment technology data that enable researchers and decision-makers to identify and quantify opportunities for technology innovations to reduce the cost and energy intensity of desalination. It is the submission point for all data generated by research conducted by the National Alliance for Water Innovation (NAWI) and is designed to be used by the broader water research community. With publicly accessible contributions from a variety of academic and industrial partners, Water DAMS seeks to enable data discoverability, improve accessibility, and accelerate collaboration that contributes to pipe parity and innovation in water treatment technologies.

Veterinar - Electronic Repository of Research and Scientific Papers

Veterinar - Elektronski repozitorijum istraživačkih i naučnih radova

Subject(s)
Content type(s)
Country
Veterinar – Electronic Repository of Research and Scientific Papers is the institutional digital repository of the University of Belgrade - Faculty of Veterinary Medicine. It provides open access to publications and other research outputs resulting from the projects implemented by the Faculty of Veterinary Medicine. The software platform of the repository is adapted to the modern standards applied in the dissemination of scientific publications and is compatible with international infrastructure in this field.

Health and Medical Care Archive

HMCA

Subject(s)
Content type(s)
Country
The Health and Medical Care Archive (HMCA) is the data archive of the Robert Wood Johnson Foundation (RWJF), the largest philanthropy devoted exclusively to health and health care in the United States. Operated by the Inter-university Consortium for Political and Social Research (ICPSR) at the University of Michigan, HMCA preserves and disseminates data collected by selected research projects funded by the Foundation and facilitates secondary analyses of the data. Our goal is to increase understanding of health and health care in the United States through secondary analysis of RWJF-supported data collections

tDAR

The Digital Archaeological Record

Subject(s)
Content type(s)
Country
The Digital Archaeological Record (tDAR) is an international digital repository for the digital records of archaeological investigations. tDAR’s use, development, and maintenance are governed by Digital Antiquity, an organization dedicated to ensuring the long-term preservation of irreplaceable archaeological data and to broadening the access to these data.

DataON Repository

previous name: KORD

Subject(s)
Content type(s)
Country
DataON is Korea's National Research Data Platform. It provides integrated search of metadata for KISTI's research data and domestic and international research data and links to raw data. DataON allows users (researchers, policy makers, etc.) to perform the following tasks: Easily search for various types of research data in all scientific fields. By registering research results, research data can be posted and cited. Build a community among researchers and enable collaborative research. It provides a data analysis environment that allows one-stop analysis of discovered research data.

NASA/IPAC Extragalactic Database

NED

Subject(s)
Content type(s)
Country
NED is a comprehensive database of multiwavelength data for extragalactic objects, providing a systematic, ongoing fusion of information integrated from hundreds of large sky surveys and tens of thousands of research publications. The contents and services span the entire observed spectrum from gamma rays through radio frequencies. As new observations are published, they are cross- identified or statistically associated with previous data and integrated into a unified database to simplify queries and retrieval. Seamless connectivity is also provided to data in NASA astrophysics mission archives (IRSA, HEASARC, MAST), to the astrophysics literature via ADS, and to other data centers around the world.

bonndata

Subject(s)
Content type(s)
Country
bonndata is the institutional, FAIR-aligned and curated, cross-disciplinary research data repository for the publication of research data for all researchers at the University of Bonn. The repository is fully embedded into the University IT and Data Center and curated by the Research Data Service Center (https://www.forschungsdaten.uni-bonn.de/en). The software that bonndata is based on is the open source software Dataverse (https://dataverse.org)

NCBI Gene

Gene

Subject(s)
Content type(s)
Country
The Gene database provides detailed information for known and predicted genes defined by nucleotide sequence or map position. Gene supplies gene-specific connections in the nexus of map, sequence, expression, structure, function, citation, and homology data. Unique identifiers are assigned to genes with defining sequences, genes with known map positions, and genes inferred from phenotypic information. These gene identifiers are used throughout NCBI's databases and tracked through updates of annotation. Gene includes genomes represented by NCBI Reference Sequences (or RefSeqs) and is integrated for indexing and query and retrieval from NCBI's Entrez and E-Utilities systems.

European Chemical Biology Database

ECBD

Subject(s)
Content type(s)
Country
The European Chemical Biology Database (ECBD) is a prototype database, currently being developed for EU-OPENSCREEN. The purpose of ECBD is to store and integrate screening data from EU-OPENSCREEN partners and contributors.

CRAWDAD

Community Resource for Archiving Wireless Data At Dartmouth (US site)

Subject(s)
Content type(s)
Country
<<<!!!<<< CRAWDAD has moved to IEEE-Dataport https://www.re3data.org/repository/r3d100012569 The datasets in the Community Resource for Archiving Wireless Data at Dartmouth (CRAWDAD) repository are now hosted as the CRAWDAD Collection on IEEE Dataport. After nearly two decades as a stand-alone archive at crawdad.org, the migration of the collection to IEEE DataPort provides permanence and new visibility. >>>!!!>>>

Animal QTLdb

Animal Quantitative Trait Loci

Subject(s)
Content type(s)
Country
This Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house all publicly available QTL and trait mapping data (i.e. trait and genome location association data; collectively called "QTL data" on this site) on livestock animal species for easily locating and making comparisons within and between species. New database tools are continuely added to align the QTL and association data to other types of genome information, such as annotated genes, RH / SNP markers, and human genome maps. Besides the QTL data from species listed below, the QTLdb is open to house QTL/association date from other animal species where feasible. Note that the JAS along with other journals, now require that new QTL/association data be entered into a QTL database as part of their publication requirements.

STRING

Known and Predicted Protein-Protein Interactions

Subject(s)
Content type(s)
Country
STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources: - Genomic Context - High-throughput Experiments - (Conserved) Coexpression - Previous Knowledge STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.

ARS

Antibiotika-Resistenz-Surveillance

Subject(s)
Content type(s)
Country
With ARS - Antimicrobial Resistance Surveillance in Germany - the infrastructure for a nationwide surveillance of antimicrobial resistance has been established, which covers both the inpatient medical care and the ambulatory care sector. This is intended to reliable data on the epidemiology of antimicrobial resistance in Germany and differential statements provided by structural features of the health care and by region are possible. ARS is designed as a laboratory-based surveillance system for continuous collection of resistance data from routine for the full range of clinically relevant bacterial pathogens. Project participants and thus data suppliers are laboratories that analyze samples of medical facilities and doctors' offices microbiologically.