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Found 197 result(s)

ExPASy Bioinformatics Resource Portal

SIB Bioinformatics Resource Portal

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Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositories and databases of SIB. For example: array map, MetaNetX, SWISS-MODEL and World-2DPAGE, and many others see a list here http://www.expasy.org/resources

RNA Abundance Database

RAD

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=== !!!!! Due to changes in technology and funding, the RAD website is no longer available !!!!! ===

DEG

Database of Essential Genes

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DEG hosts records of currently available essential genomic elements, such as protein-coding genes and non-coding RNAs, among bacteria, archaea and eukaryotes. Essential genes in a bacterium constitute a minimal genome, forming a set of functional modules, which play key roles in the emerging field, synthetic biology.

Ontology Lookup Service

OLS

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The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. The user can browse the ontologies through the website as well as programmatically via the OLS API. The OLS provides a web service interface to query multiple ontologies from a single location with a unified output format.The OLS can integrate any ontology available in the Open Biomedical Ontology (OBO) format. The OLS is an open source project hosted on Google Code.

NASA Life Sciences Portal

NLSP

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NASA Life Sciences Portal is the next generation of the Life Sciences Data Archive for Human, Animal and Plant Research NASA's Human Research Program (HRP) conducts research and develops technologies that allow humans to travel safely and productively in space. The Program uses evidence from data collected on astronauts, as well as other supporting studies. These data are stored in the research data repository, Life Sciences Data Archive (LSDA).

National Center for Health Statistics

NCHS

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The mission of NCHS is to provide statistical information that will guide actions and policies to improve the health of the American people. As the Nation's principal health statistics agency, NCHS is responsible for collecting accurate, relevant, and timely data. NCHS' mission, and those of its counterparts in the Federal statistics system, focuses on the collection, analysis, and dissemination of information that is of use to a broad range of us.

Global Biodiversity Information Facility

Data index of the Global Biodiversity Information Facility

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GBIF is an international organisation that is working to make the world's biodiversity data accessible everywhere in the world. GBIF and its many partners work to mobilize the data, and to improve search mechanisms, data and metadata standards, web services, and the other components of an Internet-based information infrastructure for biodiversity. GBIF makes available data that are shared by hundreds of data publishers from around the world. These data are shared according to the GBIF Data Use Agreement, which includes the provision that users of any data accessed through or retrieved via the GBIF Portal will always give credit to the original data publishers.

BAliBASE

Benchmark Alignment dataBASE

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A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets.

ICAC World Cotton Database

International Cotton Advisory Committee World Cotton Database

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This interactive database provides complete access to statistics on seasonal cotton supply and use for each country and each region in the world, from 1920/21 to date. This project is part of ICAC’s efforts to improve the transparency of world cotton statistics.

Health Atlas

Leipzig Health Atlas

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The Health Atlas is an alliance of medical ontologists, medical systems biologists and clinical trials groups to design and implement a multi-functional and quality-assured atlas. It provides models, data and metadata on specific use cases from medical research projects from the partner institutions.

Australian Urban Research Infrastructure Network

AURIN

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AURIN is a collaborative national network of leading researchers and data providers across the academic, government, and private sectors. We provide a one-stop online workbench with access to thousands of multidisciplinary datasets, from over 100 different data sources.

City of Mississauga Open Data Catalogue

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Search from over 100 variety of datasets such as census results, city public WiFi locations, licensed eateries and more

KU Leuven RDR

KU Leuven Research Data Repository

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KU Leuven RDR (pronounced "RaDaR") is KU Leuven's Research Data Repository, built on Dataverse.org - open source repository software built by Harvard University. RDR gives KU Leuven researchers a one-stop platform to upload, describe, and share their research data, conveniently and with support from university staff.

GRO.data

Göttingen Research Online

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GRO.data is a research data repository for the Göttingen Campus. Belonging researchers can use it for free. It serves different purposes such as: to simply preserve datasets, to keep track of changes across several versions, to share data with colleagues, to make data itself publicly available, to receive a persistent identifier upon publications.

UQ eSpace, Research Data Collections

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UQ eSpace is the single authoritative source for the research outputs of the staff and students of the University of Queensland and is the archival home of UQ Research Higher Degree digital theses. UQ eSpace raises the visibility and accessibility of UQ publications to the wider world and provides data for mandatory Government reporting requirements such as the Higher Education Research Data Collection (HERDC) and Excellence in Research for Australia (ERA) as well as for the internal UQ systems such as the Q-Index. It also operates as an institutional repository for open access publications, research datasets and other digitised materials created by staff of the University such as print materials, photographs, audio materials, videos, manuscripts and other original works.

OrthoMCL

Ortholog Groups of Protein Sequences

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OrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences. It provides not only groups shared by two or more species/genomes, but also groups representing species-specific gene expansion families. So it serves as an important utility for automated eukaryotic genome annotation. OrthoMCL starts with reciprocal best hits within each genome as potential in-paralog/recent paralog pairs and reciprocal best hits across any two genomes as potential ortholog pairs. Related proteins are interlinked in a similarity graph. Then MCL (Markov Clustering algorithm,Van Dongen 2000; www.micans.org/mcl) is invoked to split mega-clusters. This process is analogous to the manual review in COG construction. MCL clustering is based on weights between each pair of proteins, so to correct for differences in evolutionary distance the weights are normalized before running MCL.

Organelle Genome Megasequencing Program

OGMP

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The Organelle Genome Megasequencing Program (OGMP) provides mitochondrial, chloroplast, and mitochondrial plasmid genome data. OGMP tools allow direct comparison of OGMP and NCBI validated records. Includes GOBASE, a taxonomically broad organelle genome database that organizes and integrates diverse data related to mitochondria and chloroplasts.

KU ScholarWorks

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KU ScholarWorks is the digital repository of the University of Kansas. It contains scholarly work created by KU faculty, staff and students, as well as material from the University Archives. KU ScholarWorks makes important research and historical items available to a wider audience and helps assure their long-term preservation.

Nightingale Open Science

NGSCI

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Nightingale Open Science creates rich clinical datasets, linking imaging and waveforms to key health outcomes, and make them available to researchers, teachers, and learners around the world.

State of the Salmon

ステイト・オブ・ザ・サーモン

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State of the Salmon provides data on abundance, diversity, and ecosystem health of wild salmon populations specific to the Pacific Ocean, North Western North America, and Asia. Data downloads are available using two geographic frameworks: Salmon Ecoregions or Hydro 1K.

UniSave

UniProtKB Sequence/Annotation Version Archive

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The UniProtKB Sequence/Annotation Version Archive (UniSave) has the mission of providing freely to the scientific community a repository containing every version of every Swiss-Prot/TrEMBL entry in the UniProt Knowledge Base (UniProtKB). This is achieved by archiving, every release, the entry versions within the current release. The primary usage of this service is to provide open access to all entry versions of all entries. In addition to viewing their content, one can also filter, download and compare versions.

Cary Institute of Ecosystem Studies figshare

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Cary Institute data repository allows researchers to store, share and publish their research data, supplementary information and associated metadata. Each published item is assigned a Digital Object identifier (DOI), which allows the data to be citable and sustainable. This repository is a member node of DataOne.

FlyReactome

a curated knowledgebase of drosophila melanogaster pathways

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<<<!!!<<< This repository is no longer available. This record is out dated >>>!!!>>>- eir fields, maintained by the FlyReactome staff.

Metlin

The original and most comprehensive MS/MS metabolite database

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METLIN represents the largest MS/MS collection of data with the database generated at multiple collision energies and in positive and negative ionization modes. The data is generated on multiple instrument types including SCIEX, Agilent, Bruker and Waters QTOF mass spectrometers.

EMBL-EBI

European Molecular Biology Laboratory - European Bioinformatics Institute

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The European Bioinformatics Institute (EBI) has a long-standing mission to collect, organise and make available databases for biomolecular science. It makes available a collection of databases along with tools to search, download and analyse their content. These databases include DNA and protein sequences and structures, genome annotation, gene expression information, molecular interactions and pathways. Connected to these are linking and descriptive data resources such as protein motifs, ontologies and many others. In many of these efforts, the EBI is a European node in global data-sharing agreements involving, for example, the USA and Japan.