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Found 5 result(s)

Flora von Frankfurt am Main

Flora-Frankfurt

Subject(s)
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Here you will find information about the diversity of plants, the distribution and ecology as well as the history of the plant species in Frankfurt.

KBase

KBase: The U.S. Department of Energy Systems Biology Knowledgebase

Subject(s)
Content type(s)
Country
The Department of Energy Systems Biology Knowledgebase (KBase) is a software and data platform designed to meet the grand challenge of systems biology: predicting and designing biological function. KBase integrates data and tools in a unified graphical interface so users do not need to access them from numerous sources or learn multiple systems in order to create and run sophisticated systems biology workflows. Users can perform large-scale analyses and combine multiple lines of evidence to model plant and microbial physiology and community dynamics. KBase is the first large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide a knowledgebase: an integrated environment where knowledge and insights are created and multiplied.

JASPAR

Subject(s)
Content type(s)
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JASPAR is the leading open-access database of matrix profiles describing the DNA-binding patterns of transcription factors and other proteins interacting with DNA in a sequence-specific manner.

Environmental Change Network

ECN Data Centre

Subject(s)
Content type(s)
Country
The Environmental Change Network is the UK’s long-term environmental monitoring and research (LTER) programme. We make regular measurements of plant and animal communities and their physical and chemical environment. Our long-term datasets are used to increase understanding of the effects of climate change, air pollution and other environmental pressures on UK ecosystems.

Antimicrobial Peptide Database

APD

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The Antimicrobial Peptide Database (APD) was originally created by a graduate student, Zhe Wang, as his master's thesis in the laboratory of Dr. Guangshun Wang. The project was initiated in 2002 and the first version of the database was open to the public in August 2003. It contained 525 peptide entries, which can be searched in multiple ways, including APD ID, peptide name, amino acid sequence, original location, PDB ID, structure, methods for structural determination, peptide length, charge, hydrophobic content, antibacterial, antifungal, antiviral, anticancer, and hemolytic activity. Some results of this bioinformatics tool were reported in the 2004 database paper. The peptide data stored in the APD were gleaned from the literature (PubMed, PDB, Google, and Swiss-Prot) manually in over a decade.