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Found 10 result(s)

BIH / Charité Virtual Research Environment

Berlin Institute of Health / Charité Virtual Research Environment

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The Virtual Research Environment (VRE) is an open-source data management platform that enables medical researchers to store, process and share data in compliance with the European Union (EU) General Data Protection Regulation (GDPR). The VRE addresses the present lack of digital research data infrastructures fulfilling the need for (a) data protection for sensitive data, (b) capability to process complex data such as radiologic imaging, (c) flexibility for creating own processing workflows, (d) access to high performance computing. The platform promotes FAIR data principles and reduces barriers to biomedical research and innovation. The VRE offers a web portal with graphical and command-line interfaces, segregated data zones and organizational measures for lawful data onboarding, isolated computing environments where large teams can collaboratively process sensitive data privately, analytics workbench tools for processing, analyzing, and visualizing large datasets, automated ingestion of hospital data sources, project-specific data warehouses for structured storage and retrieval, graph databases to capture and query ontology-based metadata, provenance tracking, version control, and support for automated data extraction and indexing. The VRE is based on a modular and extendable state-of-the art cloud computing framework, a RESTful API, open developer meetings, hackathons, and comprehensive documentation for users, developers, and administrators. The VRE with its concerted technical and organizational measures can be adopted by other research communities and thus facilitates the development of a co-evolving interoperable platform ecosystem with an active research community.

OpenAgrar

OA

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OpenAgrar is an open access repository which publishes, stores, archives and distributes publications, publication references and research data. Its resources can be searched and used by everyone. It contains amongst others theses, reports, conference proceedings, journal articles, books, institutional documents, research datasets, videos and interviews.

AusGeochem

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AusGeochem is an easy-to-use platform for uploading, visualising, analysing and discovering georeferenced sample information and data produced by various geoscience research institutions such as universities, geological survey agencies and museums. With respect to analytical research laboratories, AusGeochem provides a centralised repository allowing laboratories to upload, archive, disseminate and publish their datasets. The intuitive user interface (UI) allows users to access national publicly funded data quickly through the ability to view an area of interest, synthesise a variety of geochemical data in real-time, and extract the required data, gaining novel scientific insights through multi-method data collation. Lithodat Pty Ltd has integrated built-in data synthesis functions into the platform, such as cumulative age histograms, age vs elevation plots, and step-heating diagrams, allowing for rapid inter-study comparisons. Data can be extracted in multiple formats for re-use in a variety of software systems, allowing for the integration of regional datasets into machine learning and AI systems.

OpenTopography

A Portal to High-Resolution Topography Data and Tools

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OpenTopography facilitates community access to high-resolution, Earth science-oriented, topography data, and related tools and resources. The OpenTopography Facility is based at the San Diego Supercomputer Center at the University of California, San Diego and is operated in collaboration with colleagues in the School of Earth and Space Exploration at Arizona State University and Earthscope Consortium. Core operational support for OpenTopography comes from the National Science Foundation Earth Sciences.

KITopen

KITopen repository

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The repository KITopen is a key infrastructure service at KIT. Immediately KITopen not only allows the publication and archiving of publications, but also on research data from all disciplines and data types. The focus is on research data from publication projects that are specifically prepared for re-use.

AuScope Data Repository

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The AuScope Data Repository preserves and offers continued access to data from Australia’s geoscience community working on fundamental geoscience questions and grand challenges, including climate change, natural resources security and natural hazards.

National Microbiome Data Collaborative

NMDC

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The long-term vision of the NMDC is to support microbiome data exploration through a sustainable data discovery platform that promotes open science and shared-ownership across a broad and diverse community of researchers, funders, publishers, and societies. The NMDC is developing a distributed data infrastructure while engaging with the research community to enable multidisciplinary and FAIR microbiome data.

VEuPathDB

formerly: Eukaryotic Pathogen Database Resources

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EuPathDB (formerly ApiDB) is an integrated database covering the eukaryotic pathogens in the genera Acanthamoeba, Annacaliia, Babesia, Crithidia, Cryptosporidium, Edhazardia, Eimeria, Encephalitozoon, Endotrypanum, Entamoeba, Enterocytozoon, Giardia, Gregarina, Hamiltosporidium, Leishmania, Nematocida, Neospora, Nosema, Plasmodium, Theileria, Toxoplasma, Trichomonas, Trypanosoma and Vavraia, Vittaforma). While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all of these resources, and the opportunity to leverage orthology for searches across genera.

Materials Cloud Archive

Materials Cloud

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FAIR & long-term storage of research data from computational materials science, or from experimental materials science that is of relevance to simulations. Complementary tools available to explore the full provenance of the calculations and to perform simulations or data analytics in the cloud.

CUAHSI

Universities Allied for Water Research

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CUAHSI's Hydrologic Information System (CUAHSI-HIS) provides web services, tools, standards and procedures that enhance access to more and better data for hydrologic analysis