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Found 18 result(s)

Ontology Lookup Service

OLS

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The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. The user can browse the ontologies through the website as well as programmatically via the OLS API. The OLS provides a web service interface to query multiple ontologies from a single location with a unified output format.The OLS can integrate any ontology available in the Open Biomedical Ontology (OBO) format. The OLS is an open source project hosted on Google Code.

climate4impact

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Climate4impact: a dedicated interface to ESGF for the climate impact community The portal Climate4impact, part of the ENES Data Infrastructure, provides access to data and quick looks of global and regional climate models and downscaled higher resolution climate data. The portal provides data transformation tooling and mapping & plotting capabilities, guidance, documentation, FAQ and examples. The Climate4Impact portal will be further developed during the IS-ENES3 project (2019-2023)and moved to a different environment. Meanwhile the portal at https://climate4impact.eu will remain available, but no new information or processing options will be included. When the new portal will become available this will be announced on https://is.enes.org/.

FlyReactome

a curated knowledgebase of drosophila melanogaster pathways

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<<<!!!<<< This repository is no longer available. This record is out dated >>>!!!>>>- eir fields, maintained by the FlyReactome staff.

EMBL-EBI

European Molecular Biology Laboratory - European Bioinformatics Institute

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The European Bioinformatics Institute (EBI) has a long-standing mission to collect, organise and make available databases for biomolecular science. It makes available a collection of databases along with tools to search, download and analyse their content. These databases include DNA and protein sequences and structures, genome annotation, gene expression information, molecular interactions and pathways. Connected to these are linking and descriptive data resources such as protein motifs, ontologies and many others. In many of these efforts, the EBI is a European node in global data-sharing agreements involving, for example, the USA and Japan.

CLARIN-LT

CLARIN-LT Repository

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Lithuania became a full member of CLARIN ERIC in January of 2015 and soon CLARIN-LT consortium was founded by three partner universities: Vytautas Magnus University, Kaunas Technology University and Vilnius University. The main goal of the consortium is to become a CLARIN B centre, which will be able to serve language users in Lithuania and Europe for storing and accessing language resources.

ESO Science Archive Facility

ESO/ST-ECF

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The ESO/ST-ECF science archive is a joint collaboration of the European Organisation for Astronomical Research in the Southern Hemisphere (ESO) and the Space Telescope - European Coordinating Facility (ST-ECF). ESO observational data can be requested after the proprietary period by the astronomical community.

ELRA Catalogue of Language Resources

ELRA Catalogue

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An increasing number of Language Resources (LT) in the various fields of Human Language Technology (HLT) are distributed on behalf of ELRA via its operational body ELDA, thanks to the contribution of various players of the HLT community. Our aim is to provide Language Resources, by means of this repository, so as to prevent researchers and developers from investing efforts to rebuild resources which already exist as well as help them identify and access those resources.

Cellular Phenotype database

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The Cellular Phenotype database stores data derived from high-throughput phenotypic studies and it is being developed as part of the Systems Microscopy Network of Excellence project. The aim of the Cellular Phenotype database is to provide easy access to phenotypic data and facilitate the integration of independent phenotypic studies. Through its interface, users can search for a gene of interest, or a collection of genes, and retrieve the loss-of-function phenotypes observed, in human cells, by suppressing the expression of the selected gene(s), through RNA interference (RNAi), across independent phenotypic studies. Similarly, users can search for a phenotype of interest and retrieve the RNAi reagents that have caused such phenotype and the associated target genes. Information about specific RNAi reagents can also be obtained when searching for a reagent ID.

Language Archive Cologne

LAC

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The Language Archive Cologne (LAC) is a research data repository for the linguistics and all humanities disciplines working with audiovisual data. The archive forms a cluster of the Data Center for Humanities in cooperation with the Institute of Linguistics of the University of Cologne. The LAC is an archive for language resources, which is freely available via a web-based access. In addition, concrete technical and methodological advice is offered in the research data cycle - from the collection of the data, their preparation and archiving, to publication and reuse.

European Union Open Data Portal

EU Open Data Portal

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The European Union Open Data Portal is the single point of access to a growing range of data from the institutions and other bodies of the European Union (EU). Data are free for you to use and reuse for commercial or non-commercial purposes. By providing easy and free access to data, the portal aims to promote their innovative use and unleash their economic potential. It also aims to help foster the transparency and the accountability of the institutions and other bodies of the EU. The EU Open Data Portal is managed by the Publications Office of the European Union. Implementation of the EU's open data policy is the responsibility of the Directorate-General for Communications Networks, Content and Technology of the European Commission.

PANDIT

Protein and Associated Nucleotide Domains with Inferred Trees

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<<<!!!<<< Efforts to obtain renewed funding after 2008 were unfortunately not successful. PANDIT has therefore been frozen since November 2008, and its data are not updated since September 2005 when version 17.0 was released (corresponding to Pfam 17.0). The existing data and website remain available from these pages, and should remain stable and, we hope, useful. >>>!!!>>> PANDIT is a collection of multiple sequence alignments and phylogenetic trees. It contains corresponding amino acid and nucleotide sequence alignments, with trees inferred from each alignment. PANDIT is based on the Pfam database (Protein families database of alignments and HMMs), and includes the seed amino acid alignments of most families in the Pfam-A database. DNA sequences for as many members of each family as possible are extracted from the EMBL Nucleotide Sequence Database and aligned according to the amino acid alignment. PANDIT also contains a further copy of the amino acid alignments, restricted to the sequences for which DNA sequences were found.

SUITS Data Repository

SUITS Open Data Repository

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The Open Data Repository of the H2020/CIVITAS/SUITS Project (https://www.suits-project.eu/) is used to store large volumes of crowdsourced traffic data, useful for SUMP implementations by local authorities of small-medium cities.

Polish Platform of Medical Research

Polska Platforma Medyczna

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Polish Platform of Medical Research (PPM) is a digital platform presenting the scientific achievements and research potential of 8 Polish medical universities from Bialystok, Gdansk, Katowice, Lublin, Szczecin, Warsaw, Wroclaw, the Nofer Institute of Occupational Medicine in Lodz and the Jagiellonian University Medical College in Cracow that form a partnership for the PPM Project. It incorporates the features of a Current Research Information System and a consortium repository and uses OMEGA-PSIR software. It provides open access to full texts of publications, doctoral theses, research data and other documents. PPM is a central platform that aggregates data from the local platforms of the PPM Project Partners. PPM is accessible for any Internet user.

HunCLARIN

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HunCLARIN is a strategic research infrastructure of Hungary’s leading knowledge centres involved in R&D in speech- and language processing. It contains linguistic resources and tools that form the basis of research. The infrastructure has obtained an “SKI” qualification (Strategic Research Infrastructure) in 2010, and has been significantly expanded since. Currently comprising 36 members, the infrastructure includes several general- and specific-purpose text corpora, different language processing tools and analysers, linguistic databases as well as ontologies. RIL HAS was a co-founder of the European CLARIN project, which aims at supporting humanities and social sciences research with the help of language technology and by making digital linguistic resources more easily available. In accordance with these goals HunClarin makes the research infrastructures developed by the respective centres directly accessible for researchers through a common network entry point. A general goal of the infrastructure is to realise the interoperability of the collected research infrastructures and to enable comparing the performance of the respective alternatives and to coordinate different foci in R&D. The coordinator and contact person of the infrastructure is Tamás Váradi, RIL HAS.

FAIRDOMHub

The SEEK datafiles

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The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. FAIRDOM (Web Site) will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.

CLARIN-UK

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CLARIN-UK is a consortium of centres of expertise involved in research and resource creation involving digital language data and tools. The consortium includes the national library, and academic departments and university centres in linguistics, languages, literature and computer science.

ChEBI

Chemical Entities of Biological Interest

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Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of 'small molecular entities'. The term 'molecular entity' encompasses any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms (either deliberately, as for drugs, or unintentionally', as for chemicals in the environment). The qualifier 'small' implies the exclusion of entities directly encoded by the genome, and thus as a rule nucleic acids, proteins and peptides derived from proteins by cleavage are not included.

Ensembl

e!

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The Ensembl project produces genome databases for vertebrates and other eukaryotic species. Ensembl is a joint project between the European Bioinformatics Institute (EBI) and the Wellcome Trust Sanger Institute (WTSI) to develop a software system that produces and maintains automatic annotation on selected genomes.The Ensembl project was started in 1999, some years before the draft human genome was completed. Even at that early stage it was clear that manual annotation of 3 billion base pairs of sequence would not be able to offer researchers timely access to the latest data. The goal of Ensembl was therefore to automatically annotate the genome, integrate this annotation with other available biological data and make all this publicly available via the web. Since the website's launch in July 2000, many more genomes have been added to Ensembl and the range of available data has also expanded to include comparative genomics, variation and regulatory data. Ensembl is a joint project between European Bioinformatics Institute (EBI), an outstation of the European Molecular Biology Laboratory (EMBL), and the Wellcome Trust Sanger Institute (WTSI). Both institutes are located on the Wellcome Trust Genome Campus in Hinxton, south of the city of Cambridge, United Kingdom.