Repository details

MyRiceBase

Name of repository
MyRiceBase
Additional name(s)
  • Malaysian Rice Database
Repository URL
http://myricebase.mardi.gov.my/
Subject(s)
Description
MyRiceBase is a curated biological database, which aims to centralise genomics and transcriptomics information for rice quality traits, particularly amylose and antioxidants. To date, MyRiceBase consists of single nucleotide polymorphisms (SNP), genes and biological networks that are available for the user to search, browse or download this information. Putative panel SNPs from the genome and expressed genes, panel SNPs of pigmented rice varieties, annotated SNPs, and co-expressed genes can be retrieved using search and filter functions. A search query can be done based on SNP ID, gene ID and variety name. MyRiceBase also provides Tableau and Neo4j for visualisation. This repository serves to aid basic, translational and applied research, towards the improvement of quality traits in rice varieties.
Contact(s)
  • support: rabiatul@mardi.gov.my
Content type(s)
Keyword(s)
Repository size
2.246 genes; 1.028.398 SNPs; 3 pathways
Repository type(s)
  • disciplinary
Mission statement for designated community
http://myricebase.mardi.gov.my/about-us-2/
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider

Institutions (2)

Institution
Government of Malaysia
Institution
Country
Malaysia
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Malaysian Acricultural Research and Development Institute
Additional name(s)
  • MARDI
Institution
Country
Malaysia
Type(s) of responsibility
  • general
Type of institution
non-profit

Policies (1)

Policy Name
Disclaimers

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (1)

DataLicense
Copyrights

Data upload (1)

Type of data upload
restricted
Data citation guideline
http://myricebase.mardi.gov.my/about-us-2/

Remarks

Remarks
Access to raw reads can be obtained from ENA database: r3d100010527
Entry date
2026-01-15
Last update
2026-01-16
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